Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01229 ATGGTAAGAGCTCCTTATTTTGATAAAAATGGAACAAAGAAAGGAGCATGGAGTGAGGAAGAGGATAAGAAGCTTATTGCTTATGTTCACAAATATGGCCACCCCAATTGGCGTCAACTTCCAAAGTTTGCAGGGTTGCAAAGATGTGGAAAAAGTTGCAGACTTCGATGGATGAATTACCTGCGCCCAAATCTAAAACGAGGGAACTACACCCCCAAGGAAGACGAAATCATCATGGATTTGCATCAAAAACATGGAAACAAATGGTCTCTGATTGCTGAAAGTCTACACGGAAGAACAGACAATGAGATAAAGAACTATTGGCACAGCCACCTAAAGAAGTTTCAAAACAGCAACAACAACACCTCTTGTGATGAAGATTTGAAGTCCATTGGATGCAAAGATTTTGAAATGCCAACGAACGAGGCTCTTGGTGTTGAATCTCTCCACATTTTGGAGAGCTCAGTGTCAATTTCCTCAGAAACTTCCTACACTGACCACAATTCCCCTTCACTTTCATCCTCTTCAAGTCACACGGAATCAACCATGAACTTGTGCAAGGAAGAAGAAAGCGTTGCTTCATTGGAAACATTGGATTCAGGGTTTAGTAACAATTTCTGGACCGAACCCTTCATTTCAGAAAACGCACTTAATCAAGATTATTTTCCCATTTCCTCTTATATGACAGAACCATTTTACTTGTGGTAG 708 0.4054 MVRAPYFDKNGTKKGAWSEEEDKKLIAYVHKYGHPNWRQLPKFAGLQRCGKSCRLRWMNYLRPNLKRGNYTPKEDEIIMDLHQKHGNKWSLIAESLHGRTDNEIKNYWHSHLKKFQNSNNNTSCDEDLKSIGCKDFEMPTNEALGVESLHILESSVSISSETSYTDHNSPSLSSSSSHTESTMNLCKEEESVASLETLDSGFSNNFWTEPFISENALNQDYFPISSYMTEPFYLW 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01229 235 CDD SANT 69 112 IPR001005 -
Phco9g01229 235 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco9g01229 235 CDD SANT 16 61 IPR001005 -
Phco9g01229 235 Gene3D - 69 132 - -
Phco9g01229 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco9g01229 235 SMART sant 13 63 IPR001005 -
Phco9g01229 235 SMART sant 66 114 IPR001005 -
Phco9g01229 235 MobiDBLite consensus disorder prediction 162 186 - -
Phco9g01229 235 FunFam MYB-related transcription factor 13 66 - -
Phco9g01229 235 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco9g01229 235 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 209 - -
Phco9g01229 235 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco9g01229 235 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco9g01229 235 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco9g01229 235 Gene3D - 7 66 - -
Phco9g01229 235 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01229 Phco-Chr9 12183660 12184986 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco9g01229 Myb_DNA-binding 4.4e-16 CL0123