Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01228 ATGGAAGCTACGTACCACAACAATGGAGGCACCAAACAGTCATCAGCGAAGACAGAAAATGAGAGGGAGAGGGATAACGAAAATGAGAAGGAGAGGGAAAACCAAAAAGCCGCTGCTAATCTTGTTTTCATCGAAGTCCTATACTTGGATAATCTAATGCAGATGTTTCAATATTCAATGTGTTTAAACAGAGAGGATTCATCTGTTGAAAACAGGCTCAGAACTCCTTTCTATGACAAAAATGGATTGAAGAAAGGTGCATGGAGTAGAGAAGAAGATGATAAGTTAAGAGCTTATGTTCAGATATATGGTCACTCTAATTGGCGTCAACTCCCCAAGTTTGCAGGTTTAGCAAGGTGTGGGAAAAGTTGCAGACTTCGTTGGTTGAATTACTTACGACCAAATCTAAAACACGGGAACTACACCTCAGAGGAAGAAGAAACAATCATCAAATTACACCAAGAATTTGGAAATAGATGGTCCTTGATTGCTGAAAAACTTCCTGGAAGAACCGACAATGAGGTAAAGAACTATTGGCATAGCCACCTAAAAAAGAGCTTGAAGAGCAATGAAATGACACCATCAGAGTTGAAGTCAAAGCCAGGTGATAACTATAGTTTTGAAGGAAATTTAGATGAGAGTGGTGGATATGAAAATTCTGAAAACCTAGGTGCCATTAGCGGTGATATCTTCCCTCATATTTTAGAAAGTTCATTGGCCAGAGACAACTATTCGCTTACCACCAATGCTGAAGAAGATGGTGTTCCTCCGTTAGTATCACACAAAGAATTCAGCGGCGATTTTTGGTCTGAGCCATTCCTCGTAGAAGATAGTCTTGATACTTTTAAAGATGAGATTTGGAGTGGTAAAGGAATGGCACTGTTTATTCCAAACTTCGATGGCGCATATTTGTTTTAG 918 0.3954 MEATYHNNGGTKQSSAKTENERERDNENEKERENQKAAANLVFIEVLYLDNLMQMFQYSMCLNREDSSVENRLRTPFYDKNGLKKGAWSREEDDKLRAYVQIYGHSNWRQLPKFAGLARCGKSCRLRWLNYLRPNLKHGNYTSEEEETIIKLHQEFGNRWSLIAEKLPGRTDNEVKNYWHSHLKKSLKSNEMTPSELKSKPGDNYSFEGNLDESGGYENSENLGAISGDIFPHILESSLARDNYSLTTNAEEDGVPPLVSHKEFSGDFWSEPFLVEDSLDTFKDEIWSGKGMALFIPNFDGAYLF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01228 305 MobiDBLite consensus disorder prediction 1 15 - -
Phco9g01228 305 ProSiteProfiles Myb-like domain profile. 133 183 IPR001005 -
Phco9g01228 305 SMART sant 84 134 IPR001005 -
Phco9g01228 305 SMART sant 137 185 IPR001005 -
Phco9g01228 305 MobiDBLite consensus disorder prediction 190 211 - -
Phco9g01228 305 MobiDBLite consensus disorder prediction 16 34 - -
Phco9g01228 305 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 74 213 - -
Phco9g01228 305 Pfam Myb-like DNA-binding domain 85 132 IPR001005 -
Phco9g01228 305 Pfam Myb-like DNA-binding domain 139 183 IPR001005 -
Phco9g01228 305 Gene3D - 139 205 - -
Phco9g01228 305 MobiDBLite consensus disorder prediction 1 34 - -
Phco9g01228 305 FunFam Transcription factor RAX3 78 138 - -
Phco9g01228 305 ProSiteProfiles Myb-like domain profile. 80 132 IPR001005 -
Phco9g01228 305 Gene3D - 78 138 - -
Phco9g01228 305 CDD SANT 87 132 IPR001005 -
Phco9g01228 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 80 132 IPR017930 -
Phco9g01228 305 CDD SANT 140 183 IPR001005 -
Phco9g01228 305 Coils Coil 16 40 - -
Phco9g01228 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 133 187 IPR017930 -
Phco9g01228 305 SUPERFAMILY Homeodomain-like 82 179 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01228 Phco-Chr9 12127031 12129529 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco9g01228 Myb_DNA-binding 3.6e-13 CL0123