Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01227 ATGGTGAGAACCACATCTTGGGACAAAAGTGGACTGAGGAAGGGTACTTGGACTCCTGAGGAAGATAGAAAATTAATTGCCTATGTTACCAGATATGGATCCTGGAATTGGCGCCAACTTCCTCGGTTTGCAGGTCTGGCAAGATGTGGGAAAAGTTGTAGACTGAGATGGATGAATTATCTGAGGCCTAATGTCAAAAGAGGGAACTTCACTCCGCAAGAAGAAGAATGCATCATCAGAATGCTTAAAAAACTTGGTAACAGATGGTCTGCTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCATTGGCACACCACCCTTAAGAAAAGGTCTGAAATAAACACACTCACAAATGAAGAAGCTAGAGCCTTCAAATCAAAGAATAAAGAATCCAAACAAGGGAGGGACTCGGTTCCTAACAATAATAGTGTTACTGTTACTCTTCCATCCAATTCCCAGACTTCTGATAATTCATCAGCCTCAGTCTCACCACTCTCATCTTCCAGCGGCGTGTTTTCCTCCACATCTTCAGATGATTGCAGTGCTGCCAGCATGAAAAATATGGTGTTTGAAGATGACTTTGGTTTTCTGGATTCATACATAGAGTCTATGAATGCAAGTTTCTGGACAGAGCTAAATCTGGGAGACATCTCCTACAGTGCAGCAGGTGAAATAGTGTCAGGAGATACTAGTGGCGCAATCAGAAGTACAGATGCTAGCGTCTATGATTCTCGTGCAATGTCTCTGCATGGGTCCACTGGCGACAGTATTGTTGTTGAAAATGACTCTCGCGGCTTTCCCGATGCATATGCAGAGGCAACGGTTGAGAACTTCTGGACGCAGCCATATGTGGCGGACATTGACATTTCCCACGTTCCAAGCGAACTTCTTGTCCCTTCTGTGGTAGAATCTGAATATTTTACTCCAATCTATGATCTGTGGGAACAAAGTTATTTCTATTAG 978 0.4325 MVRTTSWDKSGLRKGTWTPEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYLRPNVKRGNFTPQEEECIIRMLKKLGNRWSAIAAELPGRTDNEIKNHWHTTLKKRSEINTLTNEEARAFKSKNKESKQGRDSVPNNNSVTVTLPSNSQTSDNSSASVSPLSSSSGVFSSTSSDDCSAASMKNMVFEDDFGFLDSYIESMNASFWTELNLGDISYSAAGEIVSGDTSGAIRSTDASVYDSRAMSLHGSTGDSIVVENDSRGFPDAYAEATVENFWTQPYVADIDISHVPSELLVPSVVESEYFTPIYDLWEQSYFY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01227 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 203 - -
Phco9g01227 325 MobiDBLite consensus disorder prediction 130 176 - -
Phco9g01227 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco9g01227 325 CDD SANT 69 112 IPR001005 -
Phco9g01227 325 CDD SANT 16 61 IPR001005 -
Phco9g01227 325 Gene3D - 69 115 - -
Phco9g01227 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco9g01227 325 FunFam MYB-related transcription factor 13 66 - -
Phco9g01227 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco9g01227 325 SMART sant 13 63 IPR001005 -
Phco9g01227 325 SMART sant 66 114 IPR001005 -
Phco9g01227 325 MobiDBLite consensus disorder prediction 140 176 - -
Phco9g01227 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco9g01227 325 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Phco9g01227 325 Gene3D - 6 67 - -
Phco9g01227 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco9g01227 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01227 Phco-Chr9 12032698 12033904 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco9g01227 Myb_DNA-binding 1.8e-12 CL0123