Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01224 ATGGTGAGAACCCCGAGCAGTGACAAAAATGGACTGAAGAAAGGAACATGGACACCAGAGGAAGACCAGAAGTTGGTTGGTTATATTACTAGGTATGGCCACTGGAATTGGCGCCTGCTCCCCAAATTCGCAGGTCTTGCGAGATGTGGAAAGAGTTGCAGACTTAGGTGGTTGAATTACCTAAGGCCAAACCTGAAAAGAGGAAACTACAGTGAAGAAGAGGAGGAAACTATCATCAAGCTGCACCGACATCTGGGAAACAGATGGTCTGCTATTGCTGCACGGATTCCAGGAAGAACAGACAATGAAATAAAAAACTATTGGCACTCCAACCTCAAGAAACGGTTTGAACACGACTCAGCCACAGACTCTCAAGTCTCAAACTCATGTGAACAATCCCTAACAACAACAACTGAACAAAGTGCAAATACTTTCCAAAGCTTTAACTCCTCGCAAGATTATTCCCCATTTTCCCAGCATTCATCATCCTCCACAACAAGCGCAGAGTGTAACACTGTCACCATCAACGAAAATCTGGCTCTGCAAGATGAATTTGCCTTTTGGGACGCTGACTCAGATCTTGTGAGTGGCAATTTCTGGTTAGAATCATATATGCATGATATTTCATTCGCGCCTAATGAACCTGAGTACTTCAGTTTTGATGCAGAACTTTGGAGCCATGATAACTGA 690 0.4391 MVRTPSSDKNGLKKGTWTPEEDQKLVGYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNLKRGNYSEEEEETIIKLHRHLGNRWSAIAARIPGRTDNEIKNYWHSNLKKRFEHDSATDSQVSNSCEQSLTTTTEQSANTFQSFNSSQDYSPFSQHSSSSTTSAECNTVTINENLALQDEFAFWDADSDLVSGNFWLESYMHDISFAPNEPEYFSFDAELWSHDN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01224 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco9g01224 229 CDD SANT 69 112 IPR001005 -
Phco9g01224 229 Gene3D - 13 66 - -
Phco9g01224 229 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco9g01224 229 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Phco9g01224 229 Gene3D - 69 144 - -
Phco9g01224 229 CDD SANT 16 61 IPR001005 -
Phco9g01224 229 FunFam MYB-related transcription factor 13 66 - -
Phco9g01224 229 SMART sant 13 63 IPR001005 -
Phco9g01224 229 SMART sant 66 114 IPR001005 -
Phco9g01224 229 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco9g01224 229 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco9g01224 229 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 176 - -
Phco9g01224 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco9g01224 229 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01224 Phco-Chr9 11961664 11966515 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco9g01224 Myb_DNA-binding 1.5e-12 CL0123