Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01223 ATGGTGAGAACCCCTTACTGTGACAAAAGTGGACTGAAAAAAGGAACATGGACACCAGAAGAAGATTGGAAATTGATTGCTTATGTCACTACACATGGCCATAAGAATTGGCGCCAGTTGCCTAAGTTTGCAGGTCTTGCTAGGTGTGGAAAGAGCTGCAGATTGAGGTGGATGAATTACTTAAGGCCAGGCATCAAAAGAGGGAACTACACTTGTGAGGAAGAAGAGAGGATTGTCAAACTGCACAAAAGTCTTGGAAATAGGTGGTCTGTGATTGCCTCTCACTTACCTGGAAGATCAGATAACGAGATCAAAAATCACTGGCATTCACATCTTAAGAAGCGCTTTCAACACAATTCAGAAACAAATGAAAAGGTTGAAGCTTCCAATCCAGAACACCACTCCCTAATTGAATCCATTCAAGAGGAATCTCGGGAAGTTGTTGCAAGCAGTTTCCAGAACAGTTCCCTAGCTACTTCCCAAACTCCTGACGGTGATTCTCCATCGCCCCAGCATACATCATTGAGCGATGTTCTATGCATGATATCCGAACCCGAACCCGAACCTGAACCAGCCAGTAACTGGAACTTGGCTACTGATAACTTTGCTGATTTTATGGAGGAAAACACAGATCCTATAAGTGCACATTCTTGGAAAGAACTTTATGATATTTCATTCATAAGTGAATTTCTCGCTCCTTTTGTGACTGAACCTGAAAGTGTTTGTTCAGTTTATGATGTCTGGGGGCTGTTCAAATAG 759 0.4256 MVRTPYCDKSGLKKGTWTPEEDWKLIAYVTTHGHKNWRQLPKFAGLARCGKSCRLRWMNYLRPGIKRGNYTCEEEERIVKLHKSLGNRWSVIASHLPGRSDNEIKNHWHSHLKKRFQHNSETNEKVEASNPEHHSLIESIQEESREVVASSFQNSSLATSQTPDGDSPSPQHTSLSDVLCMISEPEPEPEPASNWNLATDNFADFMEENTDPISAHSWKELYDISFISEFLAPFVTEPESVCSVYDVWGLFK 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01223 252 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco9g01223 252 CDD SANT 69 112 IPR001005 -
Phco9g01223 252 CDD SANT 16 61 IPR001005 -
Phco9g01223 252 FunFam MYB-related transcription factor 13 66 - -
Phco9g01223 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco9g01223 252 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 176 - -
Phco9g01223 252 Gene3D - 13 66 - -
Phco9g01223 252 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco9g01223 252 SMART sant 13 63 IPR001005 -
Phco9g01223 252 SMART sant 66 114 IPR001005 -
Phco9g01223 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco9g01223 252 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco9g01223 252 MobiDBLite consensus disorder prediction 148 174 - -
Phco9g01223 252 Gene3D - 69 139 - -
Phco9g01223 252 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Phco9g01223 252 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01223 Phco-Chr9 11897559 11899145 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco9g01223 Myb_DNA-binding 4.1e-13 CL0123