Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01214 ATGGTGAGAACCCCATCTTGGGACGAAAGTGGACTGAGGAAGGGTACTTGGACTGCGGAGGAAGATAGAAAATTAATTGAATATGTCATTAGATATGGATCCTGGAATTGGCGCCAACTTCCTCGGTTTGCAGGTCTGGCACGATGTGGGAAAAGCTGTAGACTGAGATGGATGAATTATCTGAGGCCTAATGTCAAAAGAGGGAACTTTACTCCACAAGAAGAAGAATGCATCATCAGAATGCTCAAAAAACTTGGTAACAGATGGTCTGCTATTGCGGCTGAGTTACCAGGAAGAACAGATAACGAAATAAAAAACCTTTGGCACTCCACTCTTAAGAAAAGGTCTGAAATAAACACACTCACAAATGAAGAAGCTAGAGGCTTCAGATCAAAGAATAAAGAATCCATGAACTCTGTTCCCAACAGTAATATTGGTGTTACTGTTCCTTCTCCTGTTACTGTTCCTTCTCCTGTTACTTCAAATAATTCATCAGCCTCATTCTCATTCTCCTCACTTTCATCCTCCAGCCACGACTATTCCTCCGGGCCATGTTTCCCTTAA 564 0.422 MVRTPSWDESGLRKGTWTAEEDRKLIEYVIRYGSWNWRQLPRFAGLARCGKSCRLRWMNYLRPNVKRGNFTPQEEECIIRMLKKLGNRWSAIAAELPGRTDNEIKNLWHSTLKKRSEINTLTNEEARGFRSKNKESMNSVPNSNIGVTVPSPVTVPSPVTSNNSSASFSFSSLSSSSHDYSSGPCFP 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01214 187 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Phco9g01214 187 CDD SANT 69 112 IPR001005 -
Phco9g01214 187 Gene3D - 7 67 - -
Phco9g01214 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Phco9g01214 187 CDD SANT 16 61 IPR001005 -
Phco9g01214 187 FunFam MYB-related transcription factor 13 66 - -
Phco9g01214 187 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Phco9g01214 187 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Phco9g01214 187 SMART sant 13 63 IPR001005 -
Phco9g01214 187 SMART sant 66 114 IPR001005 -
Phco9g01214 187 MobiDBLite consensus disorder prediction 123 187 - -
Phco9g01214 187 MobiDBLite consensus disorder prediction 133 187 - -
Phco9g01214 187 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Phco9g01214 187 Gene3D - 69 115 - -
Phco9g01214 187 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 166 - -
Phco9g01214 187 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Phco9g01214 187 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01214 Phco-Chr9 11747825 11748626 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco9g01214 Myb_DNA-binding 7e-13 CL0123