Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01200 ATGATTATCCTTAGACTACAAGTCATAAAAAGGGAGCAACGACAAAAAAACACAACCAGCAAGATGGTTACTTCAGACAGAAACATGTTACTAAACTACGTTCCAGTTTATGTCATGCTCCCACTAGGAGTTGTCACTGTTGACAATGTTTTTGGAGACCCAAATGGTCTCAAAGAACGGCTCTTGAAGCTAAGAGCAACAGATGTTGATGGGGTTATGGTTGATGTGTGGTGGGGGATCGTAGAACTAAAGGGGCCTAAGCAGTACGATTGGAGTGCCTATAGGAGCTTGTTTCAGCTGGTTCAGGAATGTGGCTTGAAACTTCAAGCTATTATGTCATTCCATCAGTGTGGAGGGAATGTAGGAGATGTAGTTAACATCCCAATTCCCCAGTGGGTGCTTGACATTGGAGAATCTGATCCTGATATCTTCTACACCAACCGTTCAGGCACAAGGAATAAGGAGTATCTAAGTATTGGTGTGGATGACGAGCCTATATTCCATGGAAGAACAGCCATTGAGATATACAGTGACTACATGAAGAGTTTCAGAGAAAACATGTCAGATTTTTTAGAATCTGGGCTTATTATAGACATTGAAGTAGGGCTTGGCCCAGCAGGAGAGCTCAGATATCCCTCTTATCCACAAAGTCAAGGATGGGAATTTCCTGGTATTGGAGAATTTCAGTGCTATGACAAATATTTGAAGGCAGATTATAAAGAAGCTGTAGTAAGTGCTGGCCATCCTGAATGGGAGCTACCAGATGACGCAGGCCAGTACAATGATGAACCAGAATCTAGTGGATTCTTCAAATCAAATGGCACATATGTCACTGAGAAAGGGAAGTTCTTCTTGACTTGGTATTCAAACAAATTGCTGAATCATGGTGATCAAATCCTAGATGAAGCCAACAAAGCTTTCCTGGGCTCTAAAGTCAAATTAGCGATCAAAGTATCTGGAATCCACTGGTGGTACAAAGTTGAAAATCACGCTGCTGAGCTTACTGCTGGATATTACAACCTTAATGATAGAGACGGATATCGTCCCATTGCAAGAATGCTGTCTCGCCATCATGCCATTTTGAACTTTACTTGTCTTGAGATGAGGGACTCAGAACAAAGCTCAAAGGCCAAAAGTGCCCCAGAGGAGCTCGTTCAGCAGGTATTGAGTGGAGGTTGGAGAGAAGACATCCTAGTTGCTGGAGAAAATGCACTTCCAAGGTATGATTCCACAGCATACAACCAAATCATACTGAACGCAAGGCCACAAGGCGTCAACAAAAATGGCCCTCCAAAAATAAAGATGTTTGGAGTAACATATCTTCGTCTATCAGATGATCTACTGCAACAATCAAATTATGATACATTCAAAAAATTTGTGCTAAAGATGCATGCAGATCAGGGTTACTGTGAAGACCCTCAAAACTACAATGATGCCATAACACCACTGAAGCCATCGGCACCAAAGATTCCCATTGAGGTTCTCCTTGAAGCGACTAAACCAATACCGCCATTCCCCTGGCTTCCAGAGACAGACATGAAAATTGATGGTTGA 1554 0.4241 MIILRLQVIKREQRQKNTTSKMVTSDRNMLLNYVPVYVMLPLGVVTVDNVFGDPNGLKERLLKLRATDVDGVMVDVWWGIVELKGPKQYDWSAYRSLFQLVQECGLKLQAIMSFHQCGGNVGDVVNIPIPQWVLDIGESDPDIFYTNRSGTRNKEYLSIGVDDEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQGWEFPGIGEFQCYDKYLKADYKEAVVSAGHPEWELPDDAGQYNDEPESSGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILDEANKAFLGSKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAILNFTCLEMRDSEQSSKAKSAPEELVQQVLSGGWREDILVAGENALPRYDSTAYNQIILNARPQGVNKNGPPKIKMFGVTYLRLSDDLLQQSNYDTFKKFVLKMHADQGYCEDPQNYNDAITPLKPSAPKIPIEVLLEATKPIPPFPWLPETDMKIDG 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01200 517 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 276 295 IPR001554 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 204 226 IPR001554 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 312 328 IPR001554 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 347 370 IPR001554 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 68 82 IPR001554 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 329 340 IPR001554 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 384 406 IPR001554 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 89 107 IPR001554 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 111 132 IPR001554 GO:0000272|GO:0016161
Phco9g01200 517 PANTHER BETA-AMYLASE 1, CHLOROPLASTIC 17 467 IPR001554 GO:0000272|GO:0016161
Phco9g01200 517 FunFam Beta-amylase 25 492 - -
Phco9g01200 517 PRINTS Plant beta-amylase signature 406 415 IPR001371 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Plant beta-amylase signature 421 437 IPR001371 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Plant beta-amylase signature 350 360 IPR001371 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Plant beta-amylase signature 439 453 IPR001371 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Plant beta-amylase signature 194 203 IPR001371 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Plant beta-amylase signature 392 401 IPR001371 GO:0000272|GO:0016161
Phco9g01200 517 PRINTS Plant beta-amylase signature 454 468 IPR001371 GO:0000272|GO:0016161
Phco9g01200 517 SUPERFAMILY (Trans)glycosidases 30 513 IPR017853 -
Phco9g01200 517 ProSitePatterns Beta-amylase active site 2. 204 214 IPR018238 GO:0000272|GO:0016161
Phco9g01200 517 Pfam Glycosyl hydrolase family 14 37 459 IPR001554 GO:0000272|GO:0016161
Phco9g01200 517 Gene3D Glycosidases 23 517 - -
Phco9g01200 517 ProSitePatterns Beta-amylase active site 1. 115 123 IPR018238 GO:0000272|GO:0016161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01200 Phco-Chr9 11562726 11565507 Wgd