LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco9g01183	ATGGTTGAGCGAAAGCAGTTCAAGACCAAGTTATGTGTTCTGTATCAGAGAGGTCGCTGTAATCGCCATAATTGCTCCTTCGCGCATGGGAGTTCCGAGCTTCGACGTTTCCCTGCTTCGTTTAGTGGGAGGAGAGACTATTCAGGTAATGACTTGAGGGATAAACTTGAGAGAAGGAATTTATCTCCTCGAAGGTACTCACCAGCTCAAGATGCAAGAGGCCGCCAGAGCATCCGTGAATACAGTCCTCCGAGGTCTTTGGAGAATGTAAGAAGACATAGGAGAAAACAGCTTATTACTGGTCAAAGTGATACTTCTGGAAATTTGAAAGCCTTAGATAGAGTTCAAGATCAAGTAAAAGAAAGAAAAATGCTTTCCTCTGGTTCTAGGAATACTCTTGAGGAGCAGCTGAAGAAAGTAGATTCAGGTATCAGTGTTCTACAAAACCGAAAATTCCAGCTAGAGGTCTACCTTGATGAGAGTATTCAAGAAGTAGATAGCCTTAAGTCTAGAATTCAGGAGCTTGAAGCTCAATTATGCAAAGAGGACGAGGAGTGCAAAAGAATTACTTCAAGAATAAGGAAGTTTGTTAGAGTCCACAATCATACTTCGCAGTTACAAGATGAACTGAAGAGATCTCAAGTTCGACTTCAACGGTTCGGAGATCAGCTTGACTCAGACATTTCTAAAATTGGCGCCAATGAAGATTTAAGCATTGATATTGTCAGTAATGGTGAGAATACTGGTCTTCTTCCAATTGTCAAACATAATGTGGAGCATAATGATGCATCATCCCACAGAAAAAGGCTACATATTGATCGAGATGCTTTGGAAGATTTAAAACAAGATAGATCAAAAGATGGCCATTTGGTTGAGACAGGTAGAACTAAGAAGCGATCTCGGTGGAATATATCAGATCAATTGAATGATGAGTCCCTTGGGGGCCCAGACAATGCAACTGAAGTTATTAGAATTCTAGATCCTGAAGGCAGGCACAAGAGAGGATTGAAGCAACCTAGGATTGAAGTCCCATCAACTAGCATGGCAGCTCATGTGGCTGATGAGGACGTTGATATTGAACTTTACAACGGAACTAAAACTGCAAATACAGAAAATGAGAATGGTGTGCCATATAAGGTGAAGGCTGCACCACTTATGCTTCCCCCAGCTTTGATACCTCGCAGCAATTATTCGAAGTACGAGGGTAACGACGAGAATGTTGATGTGGATGGCTGA	1236	0.4191	MVERKQFKTKLCVLYQRGRCNRHNCSFAHGSSELRRFPASFSGRRDYSGNDLRDKLERRNLSPRRYSPAQDARGRQSIREYSPPRSLENVRRHRRKQLITGQSDTSGNLKALDRVQDQVKERKMLSSGSRNTLEEQLKKVDSGISVLQNRKFQLEVYLDESIQEVDSLKSRIQELEAQLCKEDEECKRITSRIRKFVRVHNHTSQLQDELKRSQVRLQRFGDQLDSDISKIGANEDLSIDIVSNGENTGLLPIVKHNVEHNDASSHRKRLHIDRDALEDLKQDRSKDGHLVETGRTKKRSRWNISDQLNDESLGGPDNATEVIRILDPEGRHKRGLKQPRIEVPSTSMAAHVADEDVDIELYNGTKTANTENENGVPYKVKAAPLMLPPALIPRSNYSKYEGNDENVDVDG	411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco9g01183	411	ProSiteProfiles	Zinc finger C3H1-type profile.	6	32	IPR000571	GO:0046872
	Phco9g01183	411	Coils	Coil	158	178	-	-
	Phco9g01183	411	SUPERFAMILY	CCCH zinc finger	4	36	IPR036855	GO:0046872
	Phco9g01183	411	Gene3D	-	1	36	-	-
	Phco9g01183	411	Coils	Coil	130	150	-	-
	Phco9g01183	411	PANTHER	ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 40	1	410	IPR045868	GO:0046872
	Phco9g01183	411	MobiDBLite	consensus disorder prediction	40	91	-	-
	Phco9g01183	411	MobiDBLite	consensus disorder prediction	47	64	-	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Phco9g01183		None	None	None

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco9g01183	9	11289972	11302121	Phco9g01183	9	11289972	11302121	ECH