Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01168 ATGATTCCGGCGAGAAACATGCTCTCAACGATAGCAAGGAAGAACAACAACCTTTGTGGGTTTGGATCATCTTCAACTTTCACTCTCGCGCAGCCGAACCTGATGGAAGCGTTGGAGATGGGTCAGAACACTTCGGAAAGTGAGGTCCCTCGAATCCGTGAAGATGAGTTTGACAGTGCCACCAAGTCTGGTAGTGAAAACCATGAAGGTGCCTCTGGTGACGACCAAGACCCTCGTCCCAACAAAAAGAAGCGTTACCACCGCCACACCCAACACCAGATCCAGGAAATGGAAGCATTCTTCAAGGAGTGTCCACACCCAGATGACAAGCAAAGGAAAGAACTGAGCAGGGAATTAGGTTTAGAACCATTGCAGGTTAAGTTTTGGTTTCAGAACAAGCGTACCCAGATGAAGACACAGCACGAGCGCCATGAGAATACACAGCTTAGAACCGAGAATGAGAAGCTTCGAGCAGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCGTGTCCTAATTGTGGTGGACCAACTGCTATAGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAAAATGCAAGGCTAAGAGAAGAGATTGATAGGATTTCAGCAATTGCTGCCAAGTATGTGGGGAAACCTGTGGTGAATTATTCAAATATCTCCCCTACTCTTCCTCCTCGTCCTCTAGAACTTGGAGTTGGTGCTGGTTTTGGAGGCCAGCCAGGGATTAGTGTCGACATGTATGGAGCTGGGGATCTTCTGAGGTCAATCAGTGGACCCACTGAAGCAGATAAACCGATAATTATAGAGCTAGCTGTTGCAGCTATGGAGGAGCTCATTGGAATGGCCCAAATGAATGATCCTCTTTGGTTAACTACACTTGACGCCACGTCCACTATACTCAATGAAGACGAATACGTCAGGTCCTTCCCTCGAGGAATTGGCCCAAAACCTACTGGCTTCAAATGTGAAGCTTCTCGAGAAAGTGCTGTTGTTATCATGAACCATGTCAGCCTCGTTGAGATTCTCATGGATGTAAACCAATGGTCCACAGTGTTCTCTGGCATAGTCTCAAGAGCCATGACTCTCGAAGTGCTATCAACTGGGGTGGCCGGGAACTACAATGGTGCCTTACAAGTGATGACAGCAGAATTGCAATTACCTACACCTCTTGTACCAACTCGTGAGAGTTATTTTGTAAGGTATTGTAAGCAACACTCTGATGGGACTTGGGCAGTGGTGGATGTGTCTCTGGATAATTTACGTCCAAGTCCTTCAGCCAGATGTAGAAGAAGGCCATCTGGTTGCTTAATTCAAGAAATGCCAAATGGCTATTCAAAGGTCATATGGGTGGAGCATGTGGAGGTGGATGACAGAGGTGTTCATAGTCTTTACAAACAGCTTGTTAGCTCTGGACATGCATTTGGTGCTAAACGTTGGGTTGCAACCTTAGATAGACAGTGTGAAAGACTCGCAAGTGCGATGGCAACAAACATTCCCACTGTTGACGTTGGTGTGATAACAAACCAAGAGGGGAGAAAGAGTATGATGAAGCTGGCTGAAAGGATGGTGATAAGCTTTTGTGCTGGAGTGAGTGCTTCCACTGCTCACACATGGACAACACTGTCTGGGACTGGTGCTGATGATGTAAGGGTGATGACCCGAAAGAGCGTGGATGACCCTGGACGACCCCCTGGCATCGTTCTCAGTGCTGCCACTTCTTTTTGGCTTCCAGTTCCACCTAAACGGGTTTTTGACTTTCTCCGTGACGAGAACTCTAGGAATGAGTGGGACATTCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCACACATTGCAAATGGACGAGATACTGGAAACTGCGTGTCCCTACTTCGAGTTAATAGTGCAAATTCAAGCCAGAGTAACATGTTGATACTGCAAGAGAGTTGCACCGATTCAACAGGGTCTTTTGTCATTTATGCTCCAGTGGATATTGTTGCAATGAATGTAGTTCTAAATGGAGGAGACCCAGATTATGTGGCACTCCTTCCTTCAGGGTTTGCAATTCTCCCAGATGGAACCATATCTCATGAAACTGGGCCTGGTGGATCTCTTTTAACTGTTGCTTTTCAAATACTGGTTGATTCGGTTCCAACAGCTAAGCTTTCTCTAGGATCTGTTGCCACTGTCAACAATCTCATTGCATGCACTGTTGAGAGAATCAAGGCATCTTTGTCTGGTGAACCTGCTTGA 2244 0.4626 MIPARNMLSTIARKNNNLCGFGSSSTFTLAQPNLMEALEMGQNTSESEVPRIREDEFDSATKSGSENHEGASGDDQDPRPNKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENEKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNISPTLPPRPLELGVGAGFGGQPGISVDMYGAGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMNDPLWLTTLDATSTILNEDEYVRSFPRGIGPKPTGFKCEASRESAVVIMNHVSLVEILMDVNQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQLPTPLVPTRESYFVRYCKQHSDGTWAVVDVSLDNLRPSPSARCRRRPSGCLIQEMPNGYSKVIWVEHVEVDDRGVHSLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMMKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTISHETGPGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEPA 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01168 747 CDD START_ArGLABRA2_like 268 492 - -
Phco9g01168 747 SUPERFAMILY Bet v1-like 264 495 - -
Phco9g01168 747 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677
Phco9g01168 747 Pfam START domain 274 493 IPR002913 GO:0008289
Phco9g01168 747 SUPERFAMILY Bet v1-like 512 739 - -
Phco9g01168 747 ProSiteProfiles START domain profile. 264 496 IPR002913 GO:0008289
Phco9g01168 747 Gene3D - 69 157 - -
Phco9g01168 747 CDD homeodomain 83 141 IPR001356 GO:0003677
Phco9g01168 747 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981|GO:0006355
Phco9g01168 747 MobiDBLite consensus disorder prediction 56 81 - -
Phco9g01168 747 SMART START_1 273 493 IPR002913 GO:0008289
Phco9g01168 747 FunFam Homeobox-leucine zipper protein GLABRA 2 273 492 - -
Phco9g01168 747 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 81 742 IPR042160 -
Phco9g01168 747 SUPERFAMILY Homeodomain-like 71 140 IPR009057 -
Phco9g01168 747 Gene3D - 320 490 IPR023393 -
Phco9g01168 747 Pfam Homeodomain 83 138 IPR001356 GO:0003677
Phco9g01168 747 FunFam Homeobox-leucine zipper protein HDG1 69 156 - -
Phco9g01168 747 SMART HOX_1 81 144 IPR001356 GO:0003677
Phco9g01168 747 Coils Coil 146 166 - -
Phco9g01168 747 MobiDBLite consensus disorder prediction 56 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01168 Phco-Chr9 11013859 11018781 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco9g01168 START 2.8e-59 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01168 9 11013859 11018781 Phco9g01168 9 11013859 11018781 ECH
Phco10g01310 10 35448891 35454456 Phco9g01168 9 11013859 11018781 PCT