Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01127 ATGGAGTGGCAAAGAGGCCACATCATAGGCCGGGGCTCCTCAGCCACCGTCTCCGCCGCCACTTGCTGCGCCGGTGGTGGTGTCTTTGCCGTCAAGTCAGCCGAGCTGTCTCAATCAGAGTCTTTGAAAAGGGAGCAAACAATTTTGTCCTCTATAAGTAGTCCTTATGTGGTTGCATACAGAGGGTGTGACATTACCATGGACAACAACAAGCTCTTGTTCAACCTCTTCATGGAGTACATGCCCTTTGGCACGGTTGCTCAGGCCACTCGCCGCCACGGTGGCCGGCTGGAGGAGTCGGCTATGGCACGCTACACGAGGCAAATCGTTCAGGGGCTAGAGTACTTGCATTCAAAAGAATTGGTGCATTGTGACATCAAGGGTGCTAATATCTTGATTGGTGAAGATGGGGTGAAAATTGGAGACTTGGGGTGTGCCAAGAGTGTGGTGGATTCCGCGGTGGTGATCGGCGGCACGCCGATGTTCATGGCGCCGGAGGTGGCGCGTGGGGAGGAGCAAGGGTGTGCTAGTGACATTTGGTCACTTGGGTGCACTGTGGTTGAAATGGCCACTGGCGGTGTACCATGGCCAAGTGTGGAAGACCCTTTTTCGGTGCTTTATCATATTGCATATTCTAGTGAAGTGCCTGAGATTCCTTGTTTTCTATCTGAGGAAGCAAGGGATTTTCTGGGGAAGTGCTTGAGGAGGAATCCACAAGAGAGGTGGAAGGCTAGTGAACTTTTGAAGCATCCATTTATTGGTAAATTATGTTCCAACAATAAGGAAGTTTTGGAATCTAATTCAAGTTCCCCAACTAGTGTTCTTGAGCAAGGCTATTGGAGCTCTGTGGAAGACTCGGAAAGTGTTGGCAATTTGATTCGTAATACACAAAAATTTGAACTTTTGGCTGCTGGGAGGGTCAGAATGTTGGCTCTGTCTTCTGGGGTAGCCTGTTGGGCACAACATGATGATGAAAACTGGATCACAGCCAGAGGGAATGGTGGGGAAGGTTTTGGCAATTGTGGGTCAGGGACAGCCTCTGCTAGTCATGGGTTGTCTCACTAG 1065 0.5023 MEWQRGHIIGRGSSATVSAATCCAGGGVFAVKSAELSQSESLKREQTILSSISSPYVVAYRGCDITMDNNKLLFNLFMEYMPFGTVAQATRRHGGRLEESAMARYTRQIVQGLEYLHSKELVHCDIKGANILIGEDGVKIGDLGCAKSVVDSAVVIGGTPMFMAPEVARGEEQGCASDIWSLGCTVVEMATGGVPWPSVEDPFSVLYHIAYSSEVPEIPCFLSEEARDFLGKCLRRNPQERWKASELLKHPFIGKLCSNNKEVLESNSSSPTSVLEQGYWSSVEDSESVGNLIRNTQKFELLAAGRVRMLALSSGVACWAQHDDENWITARGNGGEGFGNCGSGTASASHGLSH 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01127 354 SUPERFAMILY Protein kinase-like (PK-like) 3 281 IPR011009 -
Phco9g01127 354 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 284 - -
Phco9g01127 354 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01127 354 Pfam Protein kinase domain 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01127 354 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Phco9g01127 354 CDD STKc_MAPKKK 2 253 - -
Phco9g01127 354 Gene3D Transferase(Phosphotransferase) domain 1 2 312 - -
Phco9g01127 354 FunFam Mitogen-activated protein kinase kinase kinase 17 2 306 - -
Phco9g01127 354 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Phco9g01127 354 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01127 Phco-Chr9 10438778 10439842 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Phco9g01127 Pkinase 1.3e-52 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01127 9 10438778 10439842 Phco11g00826 11 6074939 6076267 ECH
Phco9g01127 9 10438778 10439842 Phco9g01127 9 10438778 10439842 ECH
Phco9g01127 9 10438778 10439842 Phco8g02506 8 29102211 29103456 ECH
Phco10g01330 10 35784050 35785246 Phco9g01127 9 10438778 10439842 PCT