Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01126 ATGGTTAGAGGTGGTGGACTCTCCATGGATTCAGATCCAATTGGGAGCTTCTTCCTCCACAAGCCTATTGTTCTCAACTCTTTCCCTGAAGACACAAACCACCCCAAGTGGAAACTTAGTCCCCACAACAACATGGAAGCCACTGTTAGCACCAAAGACACCATCCCCTTCCAAGTCAACCTTAGCTGTTCTCCAAACAATCATGACTCTTCCCCATCATCGCTCCACAACAGAACCGAGATGGACTTCTTCTCCGACAACAACAACAACAAGAAGGAGCACAACGTTTCCGCTTCTGCCTCTAATCATCATCATTCCACCACTCCACCTACGTTGGAATTCAAAGTAAACACTGGTCTGAATCTTCTTACTGCCAACACTAGCAGTGATCAATCTATGGTGGTTGATGAGATATCACCCAATTCAGAAGACAGAAGTGCTAAGAATGAGCTTGCTGCTCTTCAAGCTGAGCTTGAGAGAATGAAGAGGGAGAATCAAAAGTTGAGGAACACGCTTGATCAGGTTAACGTCAATTACGATGCACTTCAGATGCATTTTATGAATTTGATGCAGCAGCAGAAGGCTGAGGAAGCTGAAGAACAAGAAGTGATTGGTGGAAAGTTAGAAGAGAAGAAGCAAGGTGAGAGTAGTGGGGTATTGGTGCCAAGACAGTTCATGGATCTTGGATTGGCTACAAATGCTGACACTGACGAACCCTCTTCTTCATCAGGGGGAAGAAGTCAAGATCGATCAGGATCACCCCACGCAGAAGTGGCTTCGAAGGAATTAGGGACTGGTAAGAGTGAGAATGTTAATGACGAAGGGTATGACCAAGAGAAGAAGGAATATGGTAAAGGGATTGAAAGTGAGGATAGTCCCTCAGAACATGCTTTTTCTGGTGATAAAGTTCCAAGGTTCAGTCCTCAAAAGAATAACGTTGAACAGGCTGAGGCAACCATGAGGAAGGCAAGAGTTTCCGTTAGAGCTCGATCAGAAGCACCCATGATCACTGATGGTTGTCAATGGAGAAAGTATGGGCAGAAGATGGCCAAAGGAAACCCATGTCCTAGAGCTTATTATAGGTGTACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTACAAAGGTGTGCTGAAGACCGAACAGTCCTCATCACAACCTATGAAGGCAATCACAACCATCCTTTGCCTCCAGCAGCTATGGCAATGGCACAAACAACTTCCTCAGCAGCAAGAATGCTTCTTTCTGGGTCAATGTCTAGTGCTGACAGCCTAATGAATGCAAACTTACTCACAAGGACACTTCTCCCTTGCTCTTCAAGCATGGCTACTATCTCAGCATCTGCTCCATTCCCAACTGTTACATTGGACCTGACACAATCTCCAAACCCTCTACAGTTTCCAAGGCATCCAAACCAGTTACAAATTCCCCTCCAAGGTGTCCCTCAGAATTTTGCAAACTCCCCAGCCTCTTTAATGCCTCAGATATTTGGACAAGCACTCTACAATCAATCAAAGTTTTCTGGTCTTCAAATGTCACATGATGCAGACCCTTCACAATTTGGTAACCACCCTCCGCAGGTACCACCACACCTTACTGACACAGTTAGTGCTGCCATTGCTGCTGATCCAAACTTCACTGCAGCTCTGGCTGCAGCTATCACTTCCATTATCGGTGGTGCTCAGCAACACAAAACCAACAGCAACAACAGTAATAATAGTAACAACAATGGCAACATGACAGCCAGCAACAGCACTGGCAATGGCAACATCACAAGTAGCAACAACAGCAACGGAAAGCAATAA 1806 0.4563 MVRGGGLSMDSDPIGSFFLHKPIVLNSFPEDTNHPKWKLSPHNNMEATVSTKDTIPFQVNLSCSPNNHDSSPSSLHNRTEMDFFSDNNNNKKEHNVSASASNHHHSTTPPTLEFKVNTGLNLLTANTSSDQSMVVDEISPNSEDRSAKNELAALQAELERMKRENQKLRNTLDQVNVNYDALQMHFMNLMQQQKAEEAEEQEVIGGKLEEKKQGESSGVLVPRQFMDLGLATNADTDEPSSSSGGRSQDRSGSPHAEVASKELGTGKSENVNDEGYDQEKKEYGKGIESEDSPSEHAFSGDKVPRFSPQKNNVEQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHPLPPAAMAMAQTTSSAARMLLSGSMSSADSLMNANLLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPRHPNQLQIPLQGVPQNFANSPASLMPQIFGQALYNQSKFSGLQMSHDADPSQFGNHPPQVPPHLTDTVSAAIAADPNFTAALAAAITSIIGGAQQHKTNSNNSNNSNNNGNMTASNSTGNGNITSSNNSNGKQ 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01126 601 SMART WRKY_cls 336 396 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco9g01126 601 MobiDBLite consensus disorder prediction 232 326 - -
Phco9g01126 601 MobiDBLite consensus disorder prediction 61 111 - -
Phco9g01126 601 MobiDBLite consensus disorder prediction 197 216 - -
Phco9g01126 601 MobiDBLite consensus disorder prediction 197 218 - -
Phco9g01126 601 Gene3D WRKY domain 321 398 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco9g01126 601 SUPERFAMILY WRKY DNA-binding domain 329 397 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco9g01126 601 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 118 573 IPR044810 GO:0003700
Phco9g01126 601 MobiDBLite consensus disorder prediction 510 529 - -
Phco9g01126 601 FunFam probable WRKY transcription factor 31 321 398 - -
Phco9g01126 601 MobiDBLite consensus disorder prediction 272 298 - -
Phco9g01126 601 MobiDBLite consensus disorder prediction 564 601 - -
Phco9g01126 601 Pfam WRKY DNA -binding domain 338 395 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco9g01126 601 MobiDBLite consensus disorder prediction 234 254 - -
Phco9g01126 601 Coils Coil 144 185 - -
Phco9g01126 601 ProSiteProfiles WRKY domain profile. 331 397 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01126 Phco-Chr9 10406197 10409081 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco9g01126 WRKY 4.5e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01126 9 10406197 10409081 Phco11g00828 11 6096068 6098421 ECH
Phco9g01126 9 10406197 10409081 Phco9g01126 9 10406197 10409081 ECH
Phco10g01332 10 35804334 35806971 Phco9g01126 9 10406197 10409081 PCT