Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01115 ATGGATTGCCGCATCTATGGCGTCACGGTCCTTCTCTTCCTCCTCCCAACTCTCACATTCTCTCTCTCACAAGGTCAGATAAACTCAAACTCAATCCTCGTGGCTCTGTTGGACTCGCATTACACTGAGGTTGCTGAGCTAGTGGAAAAAGCCATGCTCCTTCAAACGCTCGAAAACACGGTAATGAACCACAACATCACAATCTTCGCACCCAGAAACGAAGCCCTCGAACGCGATCTCGACCCTGATTTCAAGCGCTTCCTTCTCGAACCCCGCAACCTGCAGTCTCTCCAAACCCTTCTCATGTCCCACATCGTCCCCAAAAGAATCACAAAACCCAAATACCAACCCGGGTTAAGTAACCCTGGTCGACCGACCCGACACAAAACCCTCGCCCAGAATCAACACCTCTCTCTCCAGACTGTTAATTCCACTCACTGGAATGTCGACTCTTCCCGTGTCACCCACCCGGATTCCCTGACCCGACCCGACGGCGTTATCCATGGCATCGACACGCTCCTCATCCCTCGCTCCGTACAAAACGACTTCAACCGCCGGCGCAACCTCATCTCCATAGCCGCCGTGAAACCCGAATCCGCTCCGGAGGTCGACCCGCGCACCCACCGCTTGAAAAAACCAGCTCCCCTGTCGCCGGCAGGCTCCGCGCCTGCGCTGCCGATCTACGACGCTATGGCGCCGGGACCATCCTTGGCGCCGGCGCCGGCTCCTGGACCGGGTGGACCCCACCACCACTTCAACGGCGAGAAACAGGTGAAAGACTTCATCGAAACACTCCTCCACTACGGCGGTTACAATGAAATGGCAGATATTCTGGTAAACTTAACGTCACTGGCGACGGAGATGGGAAGGTTAGTTTCGGAGGGTTACGTTTTGACGGTGCTGGCTCCTAATGACGAAGCGATGGCGAAGTTAACGACGGACCAGTTGAGTGAACCGGGTTCGCCCGAACAGATTATGTACTATCACTTGATTCCGGAGTATCAGACCGAGGAGAGCATGTACAATGCTGTTAGGAGGTTCGGGAAGGTCCATTACGACACGTTACGGTTGCCGCATAAGATGACGGCGCAGGAGGCTGATGGCTCCGTTAAGTTCGGTCACGGCGACGAGTCCGCGTATTTGTTCGACCCGGATATTTACAAGGATGGACGGATCTCCGTTCAGGGAATCGACGGCGTTCTGTTTCCGCCAAAGGAGGATGAGGCTGGGCCTGTGACCCGGGCCCAACCCGCTAAGGTCGTTGTTAAGCAAAGAAGAGGAAAATTGTTGGAAACAGCATGTTGGATGCTTGGAAGCTTTGGTCAGAATTCTAGATTCATAACGAAAATACTGCACAGGAAATTCCAAAGATGTAAAAAGTCAACGGAATGTGAAGGCCAGGTTACTTGA 1410 0.5369 MDCRIYGVTVLLFLLPTLTFSLSQGQINSNSILVALLDSHYTEVAELVEKAMLLQTLENTVMNHNITIFAPRNEALERDLDPDFKRFLLEPRNLQSLQTLLMSHIVPKRITKPKYQPGLSNPGRPTRHKTLAQNQHLSLQTVNSTHWNVDSSRVTHPDSLTRPDGVIHGIDTLLIPRSVQNDFNRRRNLISIAAVKPESAPEVDPRTHRLKKPAPLSPAGSAPALPIYDAMAPGPSLAPAPAPGPGGPHHHFNGEKQVKDFIETLLHYGGYNEMADILVNLTSLATEMGRLVSEGYVLTVLAPNDEAMAKLTTDQLSEPGSPEQIMYYHLIPEYQTEESMYNAVRRFGKVHYDTLRLPHKMTAQEADGSVKFGHGDESAYLFDPDIYKDGRISVQGIDGVLFPPKEDEAGPVTRAQPAKVVVKQRRGKLLETACWMLGSFGQNSRFITKILHRKFQRCKKSTECEGQVT 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01115 469 Gene3D FAS1 domain 35 179 IPR036378 -
Phco9g01115 469 SUPERFAMILY FAS1 domain 237 404 IPR036378 -
Phco9g01115 469 Gene3D FAS1 domain 251 404 IPR036378 -
Phco9g01115 469 FunFam Fasciclin-like arabinogalactan protein 16 253 404 - -
Phco9g01115 469 Pfam Fasciclin domain 283 402 IPR000782 -
Phco9g01115 469 Pfam Fasciclin domain 40 176 IPR000782 -
Phco9g01115 469 SMART fasc_3 299 404 IPR000782 -
Phco9g01115 469 SMART fasc_3 67 177 IPR000782 -
Phco9g01115 469 MobiDBLite consensus disorder prediction 198 222 - -
Phco9g01115 469 SUPERFAMILY FAS1 domain 31 177 IPR036378 -
Phco9g01115 469 ProSiteProfiles FAS1/BIgH3 domain profile. 28 174 IPR000782 -
Phco9g01115 469 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 16 22 443 IPR044654 -
Phco9g01115 469 ProSiteProfiles FAS1/BIgH3 domain profile. 258 401 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01115 Phco-Chr9 10245901 10248953 Wgd