Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g01114 | ATGAACATTTGTCGCAAGACCGAGTCTGGATTCAGGTGGTGCAAACTTTCTGGTCTCCCGCCCTACGCAGAGATGAGTGATATAAGGAAGTGGTTCATGAAATCACATGACAAGCGAAACAATGCCGCTCCCTCCAAGCCTTCCAATCAACCTAAGCCTTCTTCGGATAAACCCCAGTCCGAGAAAAATGTGGCTGGAGGTCAAGAAAGTTCAGGGAGGAGGGTAACTAGCAAATATTTTAACACAAACAAGCAAAAGGTGAAAGATGAGAAAGAAACGCAGGTGTTACCTGCTAAAAGAAAGAATGTGAAGGACAGTGAAGATATACCAGAGCCTAAGAAAGTTCATGAAGATGTTGGAGATGATTCTGTCTTGCCCACCAATAAAAAGAAGTTAGCTGAGGCCACTCCGACAAAAAAATTGAAGAGTGGATCAGGTCGGGGTATTCCCAAAAAATCTGTAGTTTTGGAAGAAAGTGATGAAGATGATGACAAAGGTGCCGTGTCTGCTGTTAAATCTGCTGGAAGGGGTGGTGGTGGAAGAGGAGCACCTGGGGGATCAACTGGTGGGAGAGGTAGAGGGGGCGGTAGGGGTGGATTCATGAATTTTGGAGAAAGAAAAGATCCCCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTGCTAACTGTTTAGCTGGCCTGACTTTTGTGATCAGTGGAACACTGGATAGCTTAGAACGTGAAGAAGCTGAAGATTTGATTAAACGCCACGGTGGCCGTGTCACTGGATCAGTCAGCAAGAAAACGAATTATCTGTTATGTGATGAAGATATTGGGGGGCGGAAGTCTGAAAAAGCCAAAGAGCTAGGAACGTCCTTCCTCACGGAGGATGGATTGTTTGATATGATTCGTGCATCAAAACCTGCAAAAGCTCCTTCACAAGCAGAAAAGAAACCTGTGAATAAGGCTGTTGCTGCAGCATCAAAAGTTTCTCCGAAACCCCTAGTTAAGGTCCCTCTGTCTTCACGCTCACCTTCTAAGCAGGCTAAGCCAATGGCTGCTTCTACTGTTCAATCTTCTGTGATGTGGACAGAGAAATATCGACCTAAAGATCCAAAGGATATCATAGGGAACCAGTCACTTATTGTTCAACTTCGTAATTGGTTGAAAGCTTGGAACGAGCAATTTTCAGACACTGGTAACAAAAAAAAGGGAAAAAAGCAAAATGACTCTGTTTTGAAAAAAGCTGTCTTGTTAAGTGGAACCCCTGGTATAGGGAAAACAACTTCAGCAAAGTTGGTCTGTCAGGAGCTTGGTTTCCAAGCCATAGAGGTAAATGCTAGTGATAGCCGTGGAAAAGCTGATAGCAAAATTGAGAAAGGAATTAGTGGAAGCAAGACAAATTCTGTTAAGGAGCTTGTAACCAATGAGTCTATTGGTGCTAATATAGAACGGTCCAAGATTTCCAAATCTGTGCTCATTATGGATGAGGTTGATGGGATGTCCGCTGGTGATAGGGGTGGTGTTGCTGATCTTATTGCTAGCATTAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGTTACAGCCAGAAACTTAAAAGCCTTGTGAACTACTGTTTGCTTCTAAGTTTTCGGAAGCCTACAAAGCAACAGATGGCAAAGAGGTTGATGGATGTTGCAAAGGCTGAAGGCCTTCAAGTTAATGAGATTGCACTTGAGGAACTAGCAGAAAGAGTTAATGGAGATGTGCGAATGGCAGTAAACCAGTTACAGTATATGAGCCTCTCTATGTCTGTTATCAACTATGATGACATTAGACAACGCTTTCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACGGCTGTTGATAAGCTTTTTGGTTTTAATGCTGGGAAGTTGAGAATGGATGAGAGGATAAATCTTAGCATGAGTGATCCTGATCTTGTTCCTCTTCTTATTCAGGAAAATTATATTAATTATAAACCAAGCTTGGCTGGTAAGGATGACGATGGCATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAATGTTCAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAGCTAGTTGTACAGCAACATGCATAATTCCTGTATCATTGTTGCACGGGCAAAGAGAAATACTTGAACAGGGAGAACGAAATTTCAACCGGTTTGGTGGGTGGCTTGGGAAGAACTCGACAATGGGCAAAAACTTTAGGCTTTTGGATGATCTTCATGTTCACATTCTTGCTTCTCGTGAGTCTAGTTCGGGAAGGGATACCATTCGCATGGAATACCTTACTCTTATTCTTAAACGATTGACTGAACCGCTACGAACCCTGCCTAAGGCTGAAGCAGTTGAACAAGTTGTGGAATTCATGAATACGTACTCTATCAGTCAGGAAGATTTTGATACTATAGTAGAGTTATCAAAATTCAAGGGTCATCCTAATCCACTAGATGGCATACAGCCTGCCATTAAGTCAGCTTTGACAAAAGCCTACAAAGAGCAAAGCAGATCTCGGGTGGTTCGAGTTGCCGACCAAATAACACTTCCTGGTGTAAAGAAGGCCCCTAAGAAGCGGATTGCTGCTATACTTGAACCAGCCGAGGAAGGAGGCGAAAAGGGGGAAGGTGACACCTCGGACCAGAGTGAAGAAGAGAACACGTCTGATACAGAAGAGTTGGAAGGCATCACCAAGGGCGAGAAGCTGCAATCAGAACTTCAAAGCTGGAATTCAAAAGCCACGGAAGTACAGTTGGAACTGAAGGGAACGGGTAATTCAAGTTCCAAGAAGGCATCGGGTGGTAGAGGTAAAGCTGCTTCTACATCTGGGAAGAAGGTTGCTCAAGCTCCCAAAAGAAAAAGGTGA | 2904 | 0.436 | MNICRKTESGFRWCKLSGLPPYAEMSDIRKWFMKSHDKRNNAAPSKPSNQPKPSSDKPQSEKNVAGGQESSGRRVTSKYFNTNKQKVKDEKETQVLPAKRKNVKDSEDIPEPKKVHEDVGDDSVLPTNKKKLAEATPTKKLKSGSGRGIPKKSVVLEESDEDDDKGAVSAVKSAGRGGGGRGAPGGSTGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGAANCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSEKAKELGTSFLTEDGLFDMIRASKPAKAPSQAEKKPVNKAVAAASKVSPKPLVKVPLSSRSPSKQAKPMAASTVQSSVMWTEKYRPKDPKDIIGNQSLIVQLRNWLKAWNEQFSDTGNKKKGKKQNDSVLKKAVLLSGTPGIGKTTSAKLVCQELGFQAIEVNASDSRGKADSKIEKGISGSKTNSVKELVTNESIGANIERSKISKSVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKRLMDVAKAEGLQVNEIALEELAERVNGDVRMAVNQLQYMSLSMSVINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNAGKLRMDERINLSMSDPDLVPLLIQENYINYKPSLAGKDDDGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQASCTATCIIPVSLLHGQREILEQGERNFNRFGGWLGKNSTMGKNFRLLDDLHVHILASRESSSGRDTIRMEYLTLILKRLTEPLRTLPKAEAVEQVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAIKSALTKAYKEQSRSRVVRVADQITLPGVKKAPKKRIAAILEPAEEGGEKGEGDTSDQSEEENTSDTEELEGITKGEKLQSELQSWNSKATEVQLELKGTGNSSSKKASGGRGKAASTSGKKVAQAPKRKR | 967 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g01114 | 967 | SMART | AAA_5 | 407 | 545 | IPR003593 | GO:0016887 | |
| Phco9g01114 | 967 | SUPERFAMILY | BRCT domain | 221 | 301 | IPR036420 | - | |
| Phco9g01114 | 967 | CDD | BRCT_RFC1 | 220 | 298 | - | - | |
| Phco9g01114 | 967 | CDD | AAA | 408 | 507 | - | - | |
| Phco9g01114 | 967 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 40 | 943 | - | - | |
| Phco9g01114 | 967 | Gene3D | - | 544 | 614 | - | - | |
| Phco9g01114 | 967 | Gene3D | - | 355 | 543 | IPR027417 | - | |
| Phco9g01114 | 967 | ProSiteProfiles | BRCT domain profile. | 220 | 301 | IPR001357 | - | |
| Phco9g01114 | 967 | MobiDBLite | consensus disorder prediction | 914 | 948 | - | - | |
| Phco9g01114 | 967 | MobiDBLite | consensus disorder prediction | 83 | 137 | - | - | |
| Phco9g01114 | 967 | MobiDBLite | consensus disorder prediction | 42 | 82 | - | - | |
| Phco9g01114 | 967 | Gene3D | BRCT domain | 197 | 299 | IPR036420 | - | |
| Phco9g01114 | 967 | FunFam | Replication factor C subunit 1 | 196 | 299 | - | - | |
| Phco9g01114 | 967 | MobiDBLite | consensus disorder prediction | 33 | 217 | - | - | |
| Phco9g01114 | 967 | PIRSF | RFC1 | 23 | 946 | IPR012178 | GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281 | |
| Phco9g01114 | 967 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 355 | 604 | IPR027417 | - | |
| Phco9g01114 | 967 | CDD | HLD_clamp_RFC | 544 | 602 | - | - | |
| Phco9g01114 | 967 | FunFam | Replication factor C subunit 1 | 355 | 543 | - | - | |
| Phco9g01114 | 967 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 615 | 760 | IPR008921 | GO:0003677|GO:0006260 | |
| Phco9g01114 | 967 | Pfam | BRCA1 C Terminus (BRCT) domain | 223 | 297 | IPR001357 | - | |
| Phco9g01114 | 967 | MobiDBLite | consensus disorder prediction | 877 | 967 | - | - | |
| Phco9g01114 | 967 | FunFam | Replication factor C subunit 1 | 544 | 615 | - | - | |
| Phco9g01114 | 967 | MobiDBLite | consensus disorder prediction | 153 | 169 | - | - | |
| Phco9g01114 | 967 | Pfam | Replication factor RFC1 C terminal domain | 684 | 846 | IPR013725 | GO:0003689|GO:0005524|GO:0005663|GO:0006260 | |
| Phco9g01114 | 967 | Gene3D | - | 616 | 725 | - | - | |
| Phco9g01114 | 967 | SMART | BRCT_7 | 222 | 300 | IPR001357 | - | |
| Phco9g01114 | 967 | FunFam | Replication factor C subunit 1 | 616 | 725 | - | - | |
| Phco9g01114 | 967 | Pfam | ATPase family associated with various cellular activities (AAA) | 411 | 510 | IPR003959 | GO:0005524|GO:0016887 |