Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01111 ATGTCAATGGAAATGATGGCAACGGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCTTACAGCAGTTTGCTAACCATAGTGACGGTTAGATGTGGACATTGTGCTAATTTGCTATCAGTTAACATGGGAGCGTCCCTTCAAGGATTTCCTCCTCAAGAGCCTCAGTCACAGAAACAGCACCTAAGCTTTGAAGAACCAAGCAGCAAGGAACTGGGATCCTCCTCTTCAAAATGTAACAAAATAGCGGCATTTGAGGCAGTAGAGCATGAACAACCAAGGATTCCTCCCATTCGTCCTACAGAGAAGAGACATCGTGTGCCTTCTGCATATAATCGGTTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGGGAGGCTTTCAGCTCCGCAGCCAAAAACTGGGCACATTTCCCTCACATTCACTTTGGGTTAAAGCTGGATGGCAACAGTCAAGCAAAGTTGGACCAGGGAGAAGCAGCTGAAAAGTCCAATGGATTCTACTGA 552 0.4529 MSMEMMATERVCYVHCNFCNTILAVSVPYSSLLTIVTVRCGHCANLLSVNMGASLQGFPPQEPQSQKQHLSFEEPSSKELGSSSSKCNKIAAFEAVEHEQPRIPPIRPTEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSSAAKNWAHFPHIHFGLKLDGNSQAKLDQGEAAEKSNGFY 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01111 183 Gene3D High mobility group box domain 109 178 IPR036910 -
Phco9g01111 183 SUPERFAMILY HMG-box 105 153 IPR036910 -
Phco9g01111 183 CDD HMG-box_SF 114 150 - -
Phco9g01111 183 PANTHER PROTEIN YABBY 6-RELATED 1 169 IPR006780 GO:0007275
Phco9g01111 183 FunFam axial regulator YABBY 5-like 98 156 - -
Phco9g01111 183 MobiDBLite consensus disorder prediction 57 85 - -
Phco9g01111 183 Pfam YABBY protein 7 160 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01111 Phco-Chr9 10158275 10164261 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Phco9g01111 YABBY 6.8e-71 CL0114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01347 10 35984204 35992056 Phco9g01111 9 10158275 10164261 PCT