Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01088 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGAGGAGCATTTGGAGCTGCCATTCTTGTTCACCACAAGGCTGAGAAGAAGAAATATGTGTTGAAAAAAATCAGGCTTGCAAGACAGACTGAACGATGCAGAAGATCTGCTCATCAAGAAATGGCTCTTATTGCTCGAATCCAGCATCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACTGGATATTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATTAAATGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTACTGTTGGCAGTGGAATACCTGCATTCAAATTTTGTTTTGCATCGTGACCTGAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATGTTCGCCTAGGGGATTTTGGCCTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCCTCGGTGGTAGGAACTCCTAATTACATGTGTCCCGAACTGCTTGCTGATATACCGTATGGATTCAAATCTGATATTTGGTCACTAGGGTGTTGTATATACGAGATGGCTGCTCATCGCCCTGCTTTTAAAGCTTTTGATATGGCAGGATTGATAAGCAAGATAAACCGTTCTTCCATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGCATGCTAAGAAAAAATCCTGAACATCGGCCAACAGCATCTGAGGTGCTTAAGCACCCTTATTTACAGCCTTATGTGGATCAATACCGTCCAGCTTTCAGTCCTCCATCAACCTGTTCTCCTGAAAAATCAATTTCTACTGTCAACTATCCTCGAAAAAACATGGCTGAAAGTCAAAACAGTAATAGTTCCAACAGTGATAAAGATAGTTTGATGTCAAATGAGAAAAACATTGCAACAGCAGTACCGAAGTGTGATAACAAAGCCACTGAGATGGATCAAACATCTATCGATGATGATGTTTCAGAGGAAGAAAGTGGCCCTAGTAATGCCAATGGCAATACCAAAACAGTTGAGCAAGAGGTGATGAAACCATCTAATAATGCACACCATTCTCATGTTGAATCTAAGCAGCCAAAAACAATTAGAAATATAATGATGGCCTTGAAAGAAGGTAAGGTTAGAGAAGCAACTTCTCCAATGAGAGGCAATCGCATAAAGCCTGGTGGTGTATCAACACAGAAAATAAGTACCGAGACACTGTCAAAATTGCCTAAGCCTAATTTTATTGTTCCTATTGTGAAACCTATCTTAGAGTCACCAACTGTTGCACTTGCACGGGCAACCCCTGACTCTGCAAAAAAAATGCAGGGGTCACATCATTCAAAGCAACAGTTTCTGATGGTAGAAGCCTCTCCAAAACTTAAAGCTAGACATGATTTGACTCCGCCACCTGCAGTTGTCAAACAAGTAGATGGAGATGTAGTTCCTCCCAAGCCAAGACAAAGAACTCCCCCAAGCTTACTTAGAAGACCTTCATTTTCGGGAAGAATGAGGCTGGCTGGAATTGATGTTCCAAATGCACCAAATGATACTGGAAAGCTAGGCACAGATAAAATAGTTCAGGAACATGAGATGAGCCCTTGTCAATTGGCCAAAGATAATGTACCAAATATTTCGAGACAGGTTACTAGAGAGCCCCAGAAGGTTTTTGAAAGAAGCTCCAAAGGAATGCAAACAGACAGCAGCAATTCTGCTTCATCTTCAGTTTCTATCCGAGGTGAACTTGCTGATGATGCTACAACTTTTATTGACATGAGAGAGCAGATGGTTCCTGGACATGTGAATGTAAGCCACATTGTAGGTGTGGAATCATGTCCTGACAGCAGCCCGCCGACAACTTGTGCACATTGTAAGATGGTTGATAATGTTCCTAAGGATTCCTGTGAGATTGCCATGAATTTTCACAATACTATAAGTAGTAATGAGAATGTGAATTCCAGTTTAAGTCAAGATCACCATGTTGAAGATTCTGAGGTAACACTTGCTTCAGAAGGTGGTCTTCTTAAATCCCAGACAACTATGTCTACTACATTCGGCTGTGATAATGGATCTGTTGATCCCTCTGCTGGAGCCACCAAAGTAATCAAAGATTTTCAAGATATTACCAAGGAAATGCCTTTGGCCAAGAATACCAAACGCGCACCCACAAGTTCTGGAGAAAAGTCTGTTCATGTAGAAGTTAGTCCAGAAAGTGTACCTGATCTATTTGTTCAGCCAGCACCTGGATGTAAGTCCCCTGGTGATGACAAATTCACAGTGAGGGAGCGACTGTCACCTGTGGTTGAAACTGTTCCTCTGGTTACCCCTCCTAAATTATCAAGCCAGAAAGTTTTGCAAGAGAAAGGAACTGTGCTGCAGAATCCACCAGAAAGGCCTGATACTGGCCATCTTCCTCCAGCCTTTGACGAAGTTATCCATGTCATACGCCATAGTAGTTACCGTGTTGGCAGCGATCAGCCAGTAAAGGAATCTGTAGAGATGGGAGTTCAAAATGTTGATGTTGGTAAGTTTATCAATGTTGTGAGGGATGATTTAGAAATGAGGAACATAACGTCACCTTTGACACTCAAATCTTCAAGTTGCTCTGATGTTACAAGCTTGAAATCTGATCAGTTGGAAATGAAAAACTTAAACACTCCTCCCATCCTTAAATCTTCAAGTTTCTCCGATTCTTCCAGCATGAAATCAAGCAATTCTGATCATCCTGGTCTTAAGGAACAAGATGTGAGTAACCCTCCTCCTCTAGTGTCAGAACCTGAATCTACTGAGCTCAGTAAAAGTAACACTCCTATGAATGAAGAGAAACTACCAGGAAAGGAAACATTGGATGTGAAATCTTTCAGACAGAGAGCAGAGGCACTTGAAGAGCTCTTGGAGTTGTCTGCAGAGTTGCTGCAGCAAAACCGATTGGAGGAACTTCAAGTTGTTCTGAAGCCCTTTGGGAAAGATAAGGTCTCCCCAAGGGAGACAGCCATTTGGTTAGCCAAGAGTCTCAAAGGAATGATGTCTGAGGAAAGTGGGGGACGCTCTTCATAA 3099 0.4234 MESRMDQYEIMEQIGRGAFGAAILVHHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKLNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPAFSPPSTCSPEKSISTVNYPRKNMAESQNSNSSNSDKDSLMSNEKNIATAVPKCDNKATEMDQTSIDDDVSEEESGPSNANGNTKTVEQEVMKPSNNAHHSHVESKQPKTIRNIMMALKEGKVREATSPMRGNRIKPGGVSTQKISTETLSKLPKPNFIVPIVKPILESPTVALARATPDSAKKMQGSHHSKQQFLMVEASPKLKARHDLTPPPAVVKQVDGDVVPPKPRQRTPPSLLRRPSFSGRMRLAGIDVPNAPNDTGKLGTDKIVQEHEMSPCQLAKDNVPNISRQVTREPQKVFERSSKGMQTDSSNSASSSVSIRGELADDATTFIDMREQMVPGHVNVSHIVGVESCPDSSPPTTCAHCKMVDNVPKDSCEIAMNFHNTISSNENVNSSLSQDHHVEDSEVTLASEGGLLKSQTTMSTTFGCDNGSVDPSAGATKVIKDFQDITKEMPLAKNTKRAPTSSGEKSVHVEVSPESVPDLFVQPAPGCKSPGDDKFTVRERLSPVVETVPLVTPPKLSSQKVLQEKGTVLQNPPERPDTGHLPPAFDEVIHVIRHSSYRVGSDQPVKESVEMGVQNVDVGKFINVVRDDLEMRNITSPLTLKSSSCSDVTSLKSDQLEMKNLNTPPILKSSSFSDSSSMKSSNSDHPGLKEQDVSNPPPLVSEPESTELSKSNTPMNEEKLPGKETLDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGRSS 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01088 1032 MobiDBLite consensus disorder prediction 935 955 - -
Phco9g01088 1032 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Phco9g01088 1032 Gene3D Transferase(Phosphotransferase) domain 1 90 340 - -
Phco9g01088 1032 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01088 1032 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01088 1032 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g01088 1032 MobiDBLite consensus disorder prediction 894 961 - -
Phco9g01088 1032 MobiDBLite consensus disorder prediction 894 926 - -
Phco9g01088 1032 MobiDBLite consensus disorder prediction 566 592 - -
Phco9g01088 1032 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Phco9g01088 1032 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Phco9g01088 1032 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Phco9g01088 1032 CDD STKc_Nek 7 262 - -
Phco9g01088 1032 FunFam Serine/threonine-protein kinase Nek5 90 335 - -
Phco9g01088 1032 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 980 - -
Phco9g01088 1032 MobiDBLite consensus disorder prediction 484 512 - -
Phco9g01088 1032 Coils Coil 969 995 - -
Phco9g01088 1032 SUPERFAMILY Protein kinase-like (PK-like) 4 310 IPR011009 -
Phco9g01088 1032 MobiDBLite consensus disorder prediction 321 357 - -
Phco9g01088 1032 MobiDBLite consensus disorder prediction 573 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01088 Phco-Chr9 9661159 9667410 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Phco9g01088 Pkinase 7.9e-66 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01373 10 36335873 36343050 Phco9g01088 9 9661159 9667410 PCT