Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01079 ATGTCGGCCCCGCGCGCTCCCTCCGCCGCAGCCGCCACCGCCACCGCCTCCTCCAATCCGCCCGATCAGATCATGCACTCTATGAAACGCCAACTACCCTTCTCCTCCATGAAACCGCCCTTCGCAGCCGCAGGAGACTACCACCGTTTCGCCCCTGACCACCGCCGCAGCCTAGACCATGACGCCGAAGCCGTGGTCATCAAGACTCCCCAATTGAAGCGAAAGAGTGAAGCAGCTGATTTTGAAGCTGATTCTGGTGACAGGATGACTCCTGGAACCACTGAACCAGCTAATAGTCCTTTTCGTACACCTGTATCAGGAAAGACAGGGAAGGGTGGCAAATCCTCTAGGATGACAAAATGCAACAGACTTGGAACTCAAACTCCAGGCTCAAATATCGGATCTCCTTCTGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACCAAGAAGTTCATCAATTTGATCAAACAAGCTGAGGATGGTATCCTTGATCTGAATAAAGCTGCAGACACGTTAGAGGTGCAAAAGAGGAGGATATATGATATAACAAACGTTCTTGAAGGGATTGGCCTTATAGAAAAGAAACTCAAGAACCGAATTCAATGGAAGGGACTGGATGTTTCGAGACCGGGAGAGGCTGATGATAATTTTGCTAGTTTACAGGCAGAAGTTGAAAATTTAACAATGGATGAACGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTGCGGGAGCTCAGTGAAGATGAAAACAATGAGAGGTTGCTTTTTGTTACTGAGGAAGATATAAAAAATTTGCCATGCTTCCAGAATGAGACCTTGATAGCAATTAAAGCTCCTCATGGCACCACTTTGGAGGTCCCTGATCCTGACGAGGCTGTTGATTATCCACAGCGGAGATACAGGATAGTCCTCAGAAGCACAATGGGCCCCATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAAGATATTAATGGTGTTGATGTTGCACCCAAACTTCCATCTAGTCCAGATGTTAACAAAAATCAATCAACAGTGGTCCCGGAGGATAGAGGGAAAGGAATAGATGTTCAGGGACCAGATGTTCACGGGCCTAGTTCAGAATTTACTACCTCTCAGGATTTCGTTAGTGGGATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGAAGCTGATTACTGGCTTTTATCAGATGCTGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAGTGGAATGAACTGGATCCGCTTCAAGAAGATTACTGCATGACTCGCGAGAACACTTCGACCCCAAGTCATCCTTCAAATGTAGGTGAAGTGTTGTCTTCTGCATCTAAACCTACTGGAGGTTGA 1407 0.4627 MSAPRAPSAAAATATASSNPPDQIMHSMKRQLPFSSMKPPFAAAGDYHRFAPDHRRSLDHDAEAVVIKTPQLKRKSEAADFEADSGDRMTPGTTEPANSPFRTPVSGKTGKGGKSSRMTKCNRLGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDNFASLQAEVENLTMDERRLDEQIREMQERLRELSEDENNERLLFVTEEDIKNLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEDINGVDVAPKLPSSPDVNKNQSTVVPEDRGKGIDVQGPDVHGPSSEFTTSQDFVSGIMKIVPSDVASEADYWLLSDADVSITDMWRTEPGVEWNELDPLQEDYCMTRENTSTPSHPSNVGEVLSSASKPTGG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01079 468 FunFam E2F transcription factor 1 142 215 - -
Phco9g01079 468 Gene3D - 220 330 - -
Phco9g01079 468 MobiDBLite consensus disorder prediction 346 384 - -
Phco9g01079 468 Pfam E2F/DP family winged-helix DNA-binding domain 150 213 IPR003316 GO:0005667|GO:0006355
Phco9g01079 468 MobiDBLite consensus disorder prediction 73 141 - -
Phco9g01079 468 PANTHER TRANSCRIPTION FACTOR E2F 87 432 IPR015633 GO:0000978|GO:0006357
Phco9g01079 468 CDD E2F_DD 224 330 IPR032198 GO:0046983
Phco9g01079 468 SUPERFAMILY "Winged helix" DNA-binding domain 148 211 IPR036390 -
Phco9g01079 468 Coils Coil 226 267 - -
Phco9g01079 468 MobiDBLite consensus disorder prediction 11 25 - -
Phco9g01079 468 SUPERFAMILY E2F-DP heterodimerization region 226 330 IPR037241 -
Phco9g01079 468 Coils Coil 164 184 - -
Phco9g01079 468 Gene3D - 142 215 IPR036388 -
Phco9g01079 468 Pfam E2F transcription factor CC-MB domain 229 329 IPR032198 GO:0046983
Phco9g01079 468 SMART E2F_TDP_2 148 213 IPR003316 GO:0005667|GO:0006355
Phco9g01079 468 MobiDBLite consensus disorder prediction 91 141 - -
Phco9g01079 468 MobiDBLite consensus disorder prediction 1 28 - -
Phco9g01079 468 MobiDBLite consensus disorder prediction 442 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01079 Phco-Chr9 9588932 9594279 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Phco9g01079 E2F_CC-MB 1.4e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g01079 9 9588932 9594279 Phco9g01079 9 9588932 9594279 ECH