Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01026 ATGGAGTGCAATGTGGAGAACAATAAGAATCTATACCTTCATGCTCCTACTTTCATTGAGTGGCTCAAACCATGTTCTTCTCCTTCATTTCTAAATTCCAACACAATATCTTCTTCTTCTTCTTCTTCATCTTCTTCTTTTTCTTTCACTCAGCATGAGCTTGTTCACGAAACCATCCAATTCTTGCCCATTTTAAGTGAAAAGGCCTCAAAAGATGAAGATCATCATGGAGTACAAAGTTTTGAGGTGAAAGAGGAAAAAGTTGAACAAGTGACTGTGGCTTTGCACATTGGTTTGCCTGACAGTGCTAAAAGGCATCATGAGGTTGTTGATGATGAGAAGGTGATTTTCCATGTCAAGGAAGAAGAAGAATCCTCCAAGAGAAGCTTCCATGGGTGCTCGTTTAACCAAGAGAGAAGGTTTTGGATTCCAACTCCAGCACAGATCCTCGTTGGACCGATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGATCAGAATTTAGGAAAGGACCAGACTCACTGAAAGGAACACAACCAGCAGCAATGTTAAGGTTGCCATGCTACTGCTGCGCCCAGGGTTGCAAGAACAACATCAACCATCCAAGGGCCAAGCCTTTGAAGGACTTTAGAACCCTCCAAACCCATTACAAAAGAAAGCACGGCACGAAGCCCTTTATGTGCAGAAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAACTGTGGCAAGTTGTGGTACTGCACTTGTGGCTCAGACTTCAAGCACAAAAGATCCCTTAAGGACCATATTAGGTCCTTTGGAAAGGGACACAACCCTCATCCTCCCTTTGAAGCTTTTGAGGATGAGAAGGAATGCATTAGTACTGGCTCTGATGATGATGAGGTTAATGCTCATCATGCATGA 966 0.4317 MECNVENNKNLYLHAPTFIEWLKPCSSPSFLNSNTISSSSSSSSSSFSFTQHELVHETIQFLPILSEKASKDEDHHGVQSFEVKEEKVEQVTVALHIGLPDSAKRHHEVVDDEKVIFHVKEEEESSKRSFHGCSFNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPPFEAFEDEKECISTGSDDDEVNAHHA 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01026 321 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Phco9g01026 321 Gene3D Classic Zinc Finger 199 289 - -
Phco9g01026 321 PANTHER ZINC FINGER PROTEIN WIP2 19 307 IPR043584 GO:0003700|GO:0010468
Phco9g01026 321 SMART c2h2final6 203 235 IPR013087 -
Phco9g01026 321 SMART c2h2final6 156 178 IPR013087 -
Phco9g01026 321 SMART c2h2final6 240 260 IPR013087 -
Phco9g01026 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Phco9g01026 321 SUPERFAMILY beta-beta-alpha zinc fingers 226 260 IPR036236 -
Phco9g01026 321 Gene3D Classic Zinc Finger 155 178 - -
Phco9g01026 321 FunFam Zinc finger protein WIP2 209 291 - -
Phco9g01026 321 SUPERFAMILY beta-beta-alpha zinc fingers 147 179 IPR036236 -
Phco9g01026 321 ProSiteProfiles Zinc finger C2H2 type domain profile. 240 260 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01026 Phco-Chr9 8748150 8750968 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco9g01026 zf-C2H2_6 0.00014 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01410 10 36753940 36756973 Phco9g01026 9 8748150 8750968 PCT