Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g01014 ATGGCGATTGATAGAATTTTTAAAGATGAAGCCAGTGAAGAAAAAGGAGAGCGGGCCAGAATGGCTTCTTTTGTTGGAGCCATGGCAATTGCTGACTTGGTGAAGACAACCTTAGGGCCAAAGGGAATGGATAAAATTTTGCAGTCTACAGGTAGAGGACGTGAAGTTACTGTCACTAATGATGGGGCTACAATCTTGAAGTCCCTCCATATTGATAACCCAGCTGCTAAAGTCCTTGTGGACCTATCTAAAGTACAAGATGATGAAGTTGGGGATGGAACTACCTCTGTTGTTGTTTTGGCTGGAGAACTCTTAAGAGAGGCGGAAAAGCTGGTTGCTGTCAAGATTCATCCAATGACAATAATATCAGGTTTCCGAATGGCTGCAGAGTGTGCCCGAAATGCTTTGTTAGAGAAGGTTGTGGACAACAAAGCTGATTCTGAGAAATTCAGGTTAGACTTACTGAACATTGCAATGACAACTTTGAGCTCAAAGATTCTCTCACAGGACAAGGAGCATTTTGCAAAATTAGCTGTGGATGCTGTAATGAGACTAAAGGGAAGCACTAATTTAGAATCTATCCAGATTATAAAGAAACCTGGAGGCTCACTGAAGGATTCATTCTTAGATGAAGGATTCATTCTTGACAAGAAAATCGGTATTGGACAACCCAAACGTATTGAGAATGCAAAGATACTGGTGGCCAACACTGCCATGGATACAGATAAAGTGAAGATATATGGTGCACGTGTTCGTGTTGATTCTATGGCTAGAGTTGCTCAGATTGAAACAGCTGAGAAAGAGAAAATGAGAGAAAAGGTGCAGAAGATAATAGGTCATGGTATCAACTGTTTTGTTAACAGGCAGTTGATTTACAATTTTCCAGAGGAGCTCTTTGCTGATGCAGGGATATTAGCTATAGAGCATGCTGATTTTGATGGTATTGAGCGTCTGGCTCTGGTAACTGGCGGCGAAATAGCATCAACTTTTGACAATCCCGAGTCTGTTAAGCTTGGGCACTGTGACCTTATTGAGGAGATTATGATTGGTGAGGATAAACTGATTCATTTCTCTGGTGTTGCTATGGGGCAGGCATGTACAATAGTTCTGAGAGGTGCTAGCCACCATGTTCTTGATGAGGCTGAGAGGTCATTGCATGATGCCTTGTGTGTGCTATCACAGACTGTAAATGACAGCAGAGTATTGCTTGGAGGTGGGTGGCCTGAGATGGTGATGTCAAAGGAAGTGGATGCATTGGCTAAGAAAACTCCTGGAAAGAAGTCTCTTGCTATTGAGGCATTCTCCCGTGCACTCTTGGCTATCCCAACAATCATTGCTGATAATGCTGGTTTGGATAGTGCCGAGTTGATTTCTCAGCTCCGTGCCGAGCATCAGAAGGAGGGATGTACTGCAGGAATTGATGTTATTTCTGGTTCTGTTGGAGACATGGCTGAACGGGGGATATGTGAAGCTTTCAAAGTCAAGCAAGCTGTATTGCTATCTTCAACAGAGGCAACTGAGATGATCCTGAGAGTTGACGAAATCATCACGTGTGCTCCAAGGAGGAGAGAAGATAGAATGTAA 1584 0.4318 MAIDRIFKDEASEEKGERARMASFVGAMAIADLVKTTLGPKGMDKILQSTGRGREVTVTNDGATILKSLHIDNPAAKVLVDLSKVQDDEVGDGTTSVVVLAGELLREAEKLVAVKIHPMTIISGFRMAAECARNALLEKVVDNKADSEKFRLDLLNIAMTTLSSKILSQDKEHFAKLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMARVAQIETAEKEKMREKVQKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGHCDLIEEIMIGEDKLIHFSGVAMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVLLGGGWPEMVMSKEVDALAKKTPGKKSLAIEAFSRALLAIPTIIADNAGLDSAELISQLRAEHQKEGCTAGIDVISGSVGDMAERGICEAFKVKQAVLLSSTEATEMILRVDEIITCAPRRREDRM 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g01014 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 56 74 IPR017998 GO:0140662
Phco9g01014 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 32 48 IPR017998 GO:0140662
Phco9g01014 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 86 105 IPR017998 GO:0140662
Phco9g01014 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 367 389 IPR017998 GO:0140662
Phco9g01014 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 401 413 IPR017998 GO:0140662
Phco9g01014 527 SUPERFAMILY GroEL apical domain-like 206 372 IPR027409 -
Phco9g01014 527 ProSitePatterns Chaperonins TCP-1 signature 3. 86 94 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Phco9g01014 527 CDD TCP1_beta 6 522 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Phco9g01014 527 NCBIfam T-complex protein 1 subunit beta 6 523 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Phco9g01014 527 FunFam T-complex protein 1 subunit beta 211 363 - -
Phco9g01014 527 NCBIfam thermosome subunit beta 6 517 - -
Phco9g01014 527 Gene3D GroEL 211 363 IPR027409 -
Phco9g01014 527 FunFam Chaperonin containing TCP1 subunit 2 142 215 - -
Phco9g01014 527 FunFam T-complex protein 1 subunit eta 27 141 - -
Phco9g01014 527 FunFam T-complex protein 1 subunit eta 400 517 - -
Phco9g01014 527 SUPERFAMILY GroEL equatorial domain-like 13 519 IPR027413 -
Phco9g01014 527 ProSitePatterns Chaperonins TCP-1 signature 2. 58 74 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Phco9g01014 527 Gene3D - 27 516 IPR027413 -
Phco9g01014 527 Pfam TCP-1/cpn60 chaperonin family 30 517 IPR002423 GO:0005524
Phco9g01014 527 Gene3D - 142 399 IPR027410 -
Phco9g01014 527 SUPERFAMILY GroEL-intermediate domain like 154 399 IPR027410 -
Phco9g01014 527 ProSitePatterns Chaperonins TCP-1 signature 1. 35 47 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Phco9g01014 527 PANTHER CHAPERONIN 11 520 IPR017998 GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g01014 Phco-Chr9 8572152 8577154 Dispersed/Transposed