Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00997 ATGGACACAGAGGATCTAGCCGACGACCTTCACAGTCTCAGCTTCGCTTCCACCACTACAACCACCAAACGCAGCACAAGTTTCAGCTCAGAAACGACCACCGTCACGCCCTCCACCTCCTCCCACTTTCTCCACCCGCCACTCCCCAACGCCAAGCCTCACGCGCCCTCCTCCGACCCCTGCGCCTCTTTCATCCACCGTACAAGGCCCCTGGCCTTCTCGCACCTTCGCTTCATGCGCCGCCTCGGCTCCGGCGACATGAGCGCCGTCTACTTGGCGGAAGCCAGGGAAGAAGGTGGCGGCGCGGTGTTCGCAGCGAAGGTGATGGAGAAGGAGGACTTGGCGAGGAGGAACAAGGAAGGGAGAGCGAGGACAGAAAGGGAAATTCTGGAAATGTTGGATCACCCGTTCTTGCCCACGCTCTACGCGTCCATCCACGCGCCCAAATGGCTCTGCTTCCTAACGCCGTTCTGCCCCGGCGGTGACTTGCACGTCCTCCGCCAGCGCTTCCCCAACAAACGCTTCCTCGAATCCGCCGTCAGGTTCTACGCATCCGAAGTTTTGTTGGCACTTGAATATCTCCATATGCTGGGGATTATCTACCGCGACCTCAAGCCCGAAAACGTGTTGATAAGATCAGACGGCCACATCATGCTCACCGACTTCGACCTGTCACTAAAATGCGACGATTCCACATCAACGGCACAGATCATCTCCGACCAAAACCCCCTTCCCACGCGCAGCAACTGCCACGTGGAAGGCGCACGGGTGGGGGCGTCGTCGTGCATAATCCCGAGCTGCATAGTCCCGACGGCGTCGTGTTTCCAGCCAAGGCGCAAGCGGAAGAAGAAGCAGAAGCTGCTTAGCGGGCCTGCGTTCGTGGCGGAGCCCATGAACGTTCGGTCGATGTCATTCGTGGGGACCCACGAGTACTTGGCGCCGGAGATCGTGTCTGGGGAGGGCCACGGTAGTGCCGTGGACTGGTGGACTCTGGGTATATTTATGTTCGAACTGTTTTACGGCGTGACACCCTTCAAGGGCATGGACCACGAGCTAACCCTGGCGAACATTGTGGCTCGAGCCCTTGAGTTCCCGAAGGAACCGGCTTGTTCAGGGGCCATGAAGGAGCTTATATCGCAGTTGCTGGTTAAGGACCCCGCAAAGAGGCTAGGGTCGCTAATGGGGGCTTCTGCAATCAAGCAACACTCTTTTTTTGACGGCGTTAATTGGGCATTGCTTAGGTGTACAACTCCACCCTTTCTTCCCCCACCTAACGCCAAAGCTGTATATGATGATGATCATCACACTTCCCCTGACATTTTCGTTGATTCTTATTAA 1338 0.5703 MDTEDLADDLHSLSFASTTTTTKRSTSFSSETTTVTPSTSSHFLHPPLPNAKPHAPSSDPCASFIHRTRPLAFSHLRFMRRLGSGDMSAVYLAEAREEGGGAVFAAKVMEKEDLARRNKEGRARTEREILEMLDHPFLPTLYASIHAPKWLCFLTPFCPGGDLHVLRQRFPNKRFLESAVRFYASEVLLALEYLHMLGIIYRDLKPENVLIRSDGHIMLTDFDLSLKCDDSTSTAQIISDQNPLPTRSNCHVEGARVGASSCIIPSCIVPTASCFQPRRKRKKKQKLLSGPAFVAEPMNVRSMSFVGTHEYLAPEIVSGEGHGSAVDWWTLGIFMFELFYGVTPFKGMDHELTLANIVARALEFPKEPACSGAMKELISQLLVKDPAKRLGSLMGASAIKQHSFFDGVNWALLRCTTPPFLPPPNAKAVYDDDHHTSPDIFVDSY 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00997 445 Gene3D Phosphorylase Kinase; domain 1 76 161 - -
Phco9g00997 445 FunFam serine/threonine-protein kinase D6PK-like 300 423 - -
Phco9g00997 445 MobiDBLite consensus disorder prediction 21 60 - -
Phco9g00997 445 MobiDBLite consensus disorder prediction 21 45 - -
Phco9g00997 445 PANTHER FLIPPASE KINASE 1-RELATED 22 427 - -
Phco9g00997 445 FunFam serine/threonine-protein kinase D6PK-like 162 229 - -
Phco9g00997 445 Pfam Protein kinase domain 302 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00997 445 Pfam Protein kinase domain 78 236 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00997 445 SUPERFAMILY Protein kinase-like (PK-like) 55 435 IPR011009 -
Phco9g00997 445 SMART serkin_6 76 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00997 445 Gene3D Transferase(Phosphotransferase) domain 1 301 423 - -
Phco9g00997 445 Gene3D Transferase(Phosphotransferase) domain 1 162 237 - -
Phco9g00997 445 ProSiteProfiles Protein kinase domain profile. 76 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00997 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Phco9g00997 445 ProSitePatterns Protein kinases ATP-binding region signature. 82 107 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00997 Phco-Chr9 8384229 8387207 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco9g00997 Pkinase 2.6e-33 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02164 2 52389094 52392688 Phco9g00997 9 8384229 8387207 ECH
Phco6g00623 6 6179284 6188620 Phco9g00997 9 8384229 8387207 ECH
Phco9g00997 9 8384229 8387207 Phco9g00997 9 8384229 8387207 ECH