Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00980 ATGGAGGCGCCTGTAGCGAGACCGAGGGGGCGCCCGAGGAAGAGGAGAAGAAATGATGAGGAGAATGAGAGCGAAGCAAAGAAGCAGGCGTCCATGGGGACGCGAGCCGTGGTTTTAGTCGGAAGGTACGTCTTGAAAAATTTTCCCAGGAACGGAGTGTTCCTAGGAAAAGTAGTGTACTACGAGGGCGGTCTTTATAGAGTTTGTTACGAGGACGGCGATTCCGAGGACCTTGACAGTGGTGAGGTCCGCACTATACTAGTAAAAGAGGGTGGAATGGATGGTGATTTAGCGCGGAGGAAGGAGAAGTTAGAAGAATTGGTGTCAAAGAATAGTGGAAAGATCGCAAATGGTTCACTGAAGAGACCAATGGAATCCATTAAGGAGGAATCTAGGGCTGAATTGTGTGAATTGAAGGATGGTGGATTGATGATTGAGAAAGATGAGGAAGAAGATGAGGAGGAGGAGGATGGGGATGTCAATTCTTGGAGTGATTCTGGCACTGGCCTGGGAATGGATTCTGGTGCTGAGGCTGAGACCCTGCCACCACCACCCGAGTTGCCCGTGTCATCAGGTACCATCGGGGTTCCTGAACAATGTGTCTCACTGGTATTCTCTGTATATGGATTCCTGAGGTCCTTTAGTATACGGTTGTTCCTACAGCCGTTTACTCTGGACGAATTCATCGGTGCCCTGAATTACCAGGTCACAAATTCACTATTTGACGCAATTCATCTGTCGCTGATGAGAGTTTTGAGACGGCACCTTGAATTCCTTTCATCAGAGGGCTCAGAGCGAGCTTCAAGATGCCTAAGGTGCAATCAATGGAGCTTGCTGGATCCAGTGACATGGCCAGTCTTTCTTTTACAATATTTGGTAGTCAGTGGACACACAAATTCTCATGAGTGGAAAGCATTTTACGAAGAGGTGTCCACTGTAGAATATTATGTACTTCCTGTCAGTAGGAAGCTGATGATATTGCAAATTCTCTGTGATGATGTTTTGGAATCTGAGGATATTTTAAATGAAATGAACATTCGGAGAGAATCTGAGGTTGGGATGGATTATGATGGAGAAGATATCCTTCCTACAGAATTTGGGCTTAGAAGAGTCGAGCCAAGATACACCTTTACTTCAGCATGTGAGGATAAAGAAGCTACAAAGTTTGTTTCAGCTTCAAATGCTGTGAACCAACCTGGGAGCTTTATTTCATATTCCAGACATACAGAAAGTACTGAAGATGGTGATGTTGATAGAAATGGAGATGAATGTCGCCTCTGTGGCATGGATGGGACCCTGCTTTGTTGTGATGGGTGTCCCTCTGCTTATCATTCAAGGTGTATTGGTGTGTTGAAAAATCATATACCAGATGGGCCATGGTATTGTCCAGAGTGCAAAATAAATATGTCGGGGCCAACCATTGCAAAGGGAACAACACTTCGAGGGGCTGAAATATTTGGAAAGGATTTGTATGGGCAACTCTTCATGGGAACCTGCGAACATCTACTTGTGCTGAATATTGGCAGTGCTGAATCTTGTCTTAGATACTACAATCAGAATGACATTCCCAAAGTTCTCCGAGTGCTTTATGCATCCATGCCGCACAGACCAATATACCATGATATTTGCATGGCAATGCTACAATATTGGAGTGTTCCAGAAAGTTTGTTGTTTCATTCTGTTTCAAGTGGAGCAAATGTGAACTCAGCAAATAGAAAGGAGGAGACTAAGTCGTCTTCTTTTTTACTTCCTCCTTTGGGTGAAGGCAATTTGATGAAGGAAGAGTATCCTTTAACCTCTGTCAGTATAACTTACTGTGACAATATGGTGCCATCTCTAGATGCTTCATCAGTTTCCACTCAAAGTTCTGCTCTTCAGTGTAATGGCAACGGTAGCAGTAGTGAGTGCCCTGTTGTGACTACAAAGCTTCCTGAGGACAGTAGGATGGAGTCCATCCTCTCAGCTGATTCTGCTTCTGTTAGTTGTCATTCCAATATGAACCATGGAAATTTTGATGATAGGTCTACAGTGGTAGATCCTGGCAAGTGCTCTCCGGTAAATAGTCAATTTAGTTATCATGGCCATGCAAATGATACAGGGTTTCCTATAAATATTTCTTTCCAAACCAAAGAAAGCACTCAAGCCAGTTTTGAAAAGTGTGAACGCAATGTAACCAATGGTTTTGCCTACATGGGTTTCTCCTATAAACCTTTGTCGTACATGAATTACTATGTACATGGTGAATTTGCTGCATCAGCGGCTGCTAAATTTGCCCTTCTTTCCTCTGAGGAATCTAGGTCAGAGGGCCATGTGTCTGACAATCAGAGGAAATTGGCATCTGGAAACACTTACTTGCAAGCAAAAGCATTCTCATTAACTGCTTCACGTTTCTTTTGGCCAAGTTCTGAGAAGAAGCCTGTGGAGGTTCCAAGAGAAAGGTGTGGCTGGTGCATTTCTTGCAAAGCGCCTGCTTCAAGCAAGAGAGGATGCATGTTAAATCATGCTGCTCTAAGTGCCACAAAGAGTGCTATAAAAGTGCTTGCTGGTTTTTCTCCTATTAGAAGTGTGGAGGGAGTACTCCCTAGTATCGCAACCTACATTATATACATGGAGGAATGTTTACGTGGTTTAGTAGTTGGGCCCTTCCTAAGTTCAATCTACAGAAGGGAATGGCGTAAGCAAGTGGAACAGGCCACAACATTTAGTGCTATCAAACCACTTTTACTTGAACTTGAGGAGAACATTCGGACAATTTCTTTCTGTGGGGACTGGGTCAAGCTGATGGATGACTGGTTGGTTGAATTTTCCATGGTACAAAGTGCCACATATTCTCTTGGAACAGCACAGAAGCGTGCACCAAGTGGGAGGCGTTACAAGAAGCGGTCAGCTATTGATGAAGCTACAGCTGATGGTTGCCCTGAAAGCTTTGTGTTGTGGCGTGGTGGCAAATTCACCAAATTTATATTCCAGAAAGCGATCTTGCCAAAATCCATGGTCAGAAAAGCAGCACGGCAAGGTGGTTCAAGAAAAATTTCTACCATTTTTTATGCTGATGGCATTGATATCCCTAAAAGAAGTAGACAACTTGTTTGGAGAGCTTCTGTACAAATGAGTAGGAATGCATCGCAGCTGGCACTTCAGGTCAGATATCTGGATTTTTATCTCAGATGGAGTGATCTGATTCGTCCTGAGCAGAATATACAGGATGGAAAAGGTCAGGAGACTGAAGCTTCTGCTTTCAGAAATGCAAATATTTGCGACACTAAACTGGTAGAGGGGAAAAATTGTTATGGGATAGCTTTTGGGAGTCAAAAACATCTTCCTTCTCGGGTCATGAAAAATGTTATTGAAATAGAGCAAAATTCTGAAGGAAAGGAGAAGTATTGGTTTTCTGAAGCACGAATTCCTCTATATTTGGTGAAAGAGTATGAAGAAGGCAAGGGAAACATGCCATATAATGAAGAGCAGCATTTGAACACTGCATCTGGGTTGCATAGAAAGCGGTTGAAAGCTATCTGCAAGGACATATTTTTTTACCTTACATGCAAGAGAGATAACTTGGATGTGGTGTCATGTTCTGTATGTCAGATGGGTGTTTTAATTAGGGATGCTACCAAGTGTAATGCATGCCAAGGTTATTGCCATGAGGGTTGTTCCACAAATTCAATAGTCTCTGCAAATGAAGTTGAGTACTTGAGAACGTGCAAGCAATGTTACCATGCCAGATTACTTGCTCAGAAAGAGAATAGTAATGAATCTCCTACCAGTCCATTACTCCTACGAGGACGAGAAAATAACTCTGGGACAGTTTTGAAGAGATCAAGGCCTAAAACTCTTGATCAAGTACAGAAATCTTCCAAGACAAAGGCTAAATGTTCTGGACTAGAACCAACTACTAGGATAAATGACAATCATCTTGACATGCAACAAGTTGCTTCCGTGGCCACTTCAGCTGGAAAACGCCACCGCAAAAACTGTTCTTGGGGTATTATATGGAAAAAGAAAAATAATGAAGATACAGACAATGATTTCAAGCTCAGGAACATACTTTTGAAAGGGAGCTCAAACATACCAGAAGTAAAACCTGTTTGTCACTTGTGTCGAAAGCCATATATGTCTGATCTGATGTATATTTGCTGTGAGACATGCCAAAATTGGTATCATGCTGAAGCTGTTGAACTTGAAGAATCCAAACTTTCTAGTGTGTTGGGCTTCAAATGTTGCAAGTGTCGAAGGATAAAATCACCTGTTTGTCCTTACTCTGATGTGAAGCCTAAGAGACCAGAGGGCAAAAAGTCACGCACAAAAGCAAAGAAAGAACATTCTGGAGCAGATACTGATTCTGGAGCAATCTCTGATATGAGAGAGTGTGAAGCTGCTACTCCCGTCTTTCCTGTATATGATGATACTTCCGCCTTTTCTGTGGAGGATCCTAGTTCTGTCTTTCCTGATGAGGATCCTACTCCCCTCTTTCCTGTTGAGGATGATCCTCTTCTTTTCTCTCTCTCAAGTGTTGAACTGATAACAGAACCTAAGATAGATGAGGATATTGAGTGGAACAGTGTCAATGTCTCTGGGCCAGGGCTTCAGAAACTGACAGTGAGAAGGAATGTTAAGAATGAGGGTGATGATGATTCTTTTGGAGGTGTACCTTTGGATGCTGAATTCTCTACCTACGGTGGTGGAGAGGCAGGTAATCTGTGCAATCCTGCAGAGGAATCTACATCTTTAGAATATGCCTCTGGTGTTGACTTAGACAGCAAGCTGCCGGATGACTCTCAAAATGTAAATTACGATGATTACATGGATTTTGAACCCCATACCTACTTCTCTGTAACAGAACTGCTACAGTCAGATGATGGTGGTCAGTTTGAGGGAGTTGATATGTCAGGGGACTTGTCAGGATATATGGAAAATTCTAGCACCACCCTTATTCCTGAATCGTGTGGAGGTGTTAGTTTGGCAGATAATTCAGAACCTACAACTTACACCGGCTATAGTTGTATGCAATGTTCGCAGATGGAACCAGCCCCTGATCTCCGTTGTGAGATTTGTGGGATTTTGATTCACAGCCAATGTTCGCCTTGGGTTGAATTACCATCGACTGGAAGTTGGAGGTGTGGCCATTGCCGGGAATACGGGGCACATGACGAGAGGAGTCGATGGTTTTCGTTGTTGATCTGGAATCATTGCATTTCGGCGGATTTTGTTCCCTAG 5217 0.4315 MEAPVARPRGRPRKRRRNDEENESEAKKQASMGTRAVVLVGRYVLKNFPRNGVFLGKVVYYEGGLYRVCYEDGDSEDLDSGEVRTILVKEGGMDGDLARRKEKLEELVSKNSGKIANGSLKRPMESIKEESRAELCELKDGGLMIEKDEEEDEEEEDGDVNSWSDSGTGLGMDSGAEAETLPPPPELPVSSGTIGVPEQCVSLVFSVYGFLRSFSIRLFLQPFTLDEFIGALNYQVTNSLFDAIHLSLMRVLRRHLEFLSSEGSERASRCLRCNQWSLLDPVTWPVFLLQYLVVSGHTNSHEWKAFYEEVSTVEYYVLPVSRKLMILQILCDDVLESEDILNEMNIRRESEVGMDYDGEDILPTEFGLRRVEPRYTFTSACEDKEATKFVSASNAVNQPGSFISYSRHTESTEDGDVDRNGDECRLCGMDGTLLCCDGCPSAYHSRCIGVLKNHIPDGPWYCPECKINMSGPTIAKGTTLRGAEIFGKDLYGQLFMGTCEHLLVLNIGSAESCLRYYNQNDIPKVLRVLYASMPHRPIYHDICMAMLQYWSVPESLLFHSVSSGANVNSANRKEETKSSSFLLPPLGEGNLMKEEYPLTSVSITYCDNMVPSLDASSVSTQSSALQCNGNGSSSECPVVTTKLPEDSRMESILSADSASVSCHSNMNHGNFDDRSTVVDPGKCSPVNSQFSYHGHANDTGFPINISFQTKESTQASFEKCERNVTNGFAYMGFSYKPLSYMNYYVHGEFAASAAAKFALLSSEESRSEGHVSDNQRKLASGNTYLQAKAFSLTASRFFWPSSEKKPVEVPRERCGWCISCKAPASSKRGCMLNHAALSATKSAIKVLAGFSPIRSVEGVLPSIATYIIYMEECLRGLVVGPFLSSIYRREWRKQVEQATTFSAIKPLLLELEENIRTISFCGDWVKLMDDWLVEFSMVQSATYSLGTAQKRAPSGRRYKKRSAIDEATADGCPESFVLWRGGKFTKFIFQKAILPKSMVRKAARQGGSRKISTIFYADGIDIPKRSRQLVWRASVQMSRNASQLALQVRYLDFYLRWSDLIRPEQNIQDGKGQETEASAFRNANICDTKLVEGKNCYGIAFGSQKHLPSRVMKNVIEIEQNSEGKEKYWFSEARIPLYLVKEYEEGKGNMPYNEEQHLNTASGLHRKRLKAICKDIFFYLTCKRDNLDVVSCSVCQMGVLIRDATKCNACQGYCHEGCSTNSIVSANEVEYLRTCKQCYHARLLAQKENSNESPTSPLLLRGRENNSGTVLKRSRPKTLDQVQKSSKTKAKCSGLEPTTRINDNHLDMQQVASVATSAGKRHRKNCSWGIIWKKKNNEDTDNDFKLRNILLKGSSNIPEVKPVCHLCRKPYMSDLMYICCETCQNWYHAEAVELEESKLSSVLGFKCCKCRRIKSPVCPYSDVKPKRPEGKKSRTKAKKEHSGADTDSGAISDMRECEAATPVFPVYDDTSAFSVEDPSSVFPDEDPTPLFPVEDDPLLFSLSSVELITEPKIDEDIEWNSVNVSGPGLQKLTVRRNVKNEGDDDSFGGVPLDAEFSTYGGGEAGNLCNPAEESTSLEYASGVDLDSKLPDDSQNVNYDDYMDFEPHTYFSVTELLQSDDGGQFEGVDMSGDLSGYMENSSTTLIPESCGGVSLADNSEPTTYTGYSCMQCSQMEPAPDLRCEICGILIHSQCSPWVELPSTGSWRCGHCREYGAHDERSRWFSLLIWNHCISADFVP 1738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00980 1738 MobiDBLite consensus disorder prediction 1249 1276 - -
Phco9g00980 1738 ProSiteProfiles Zinc finger PHD-type profile. 421 468 IPR019787 -
Phco9g00980 1738 ProSiteProfiles DDT domain profile. 198 258 IPR018501 -
Phco9g00980 1738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1358 1417 IPR013083 -
Phco9g00980 1738 SMART PHD_3 1667 1711 IPR001965 -
Phco9g00980 1738 SMART PHD_3 1191 1239 IPR001965 -
Phco9g00980 1738 SMART PHD_3 423 466 IPR001965 -
Phco9g00980 1738 SMART PHD_3 1363 1411 IPR001965 -
Phco9g00980 1738 MobiDBLite consensus disorder prediction 14 28 - -
Phco9g00980 1738 MobiDBLite consensus disorder prediction 142 191 - -
Phco9g00980 1738 MobiDBLite consensus disorder prediction 1249 1286 - -
Phco9g00980 1738 MobiDBLite consensus disorder prediction 1424 1446 - -
Phco9g00980 1738 Pfam PHD-finger 424 466 IPR019787 -
Phco9g00980 1738 ProSitePatterns Zinc finger PHD-type signature. 424 465 IPR019786 -
Phco9g00980 1738 SMART testlast3 198 258 IPR018501 -
Phco9g00980 1738 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 474 IPR013083 -
Phco9g00980 1738 MobiDBLite consensus disorder prediction 1 31 - -
Phco9g00980 1738 PANTHER PHD FINGER FAMILY PROTEIN 33 1677 - -
Phco9g00980 1738 SUPERFAMILY FYVE/PHD zinc finger 1359 1417 IPR011011 -
Phco9g00980 1738 MobiDBLite consensus disorder prediction 146 161 - -
Phco9g00980 1738 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 301 344 IPR028942 -
Phco9g00980 1738 SUPERFAMILY FYVE/PHD zinc finger 409 471 IPR011011 -
Phco9g00980 1738 MobiDBLite consensus disorder prediction 1422 1452 - -
Phco9g00980 1738 CDD Tudor_AtPTM-like 40 87 IPR047365 -
Phco9g00980 1738 CDD PHD2_CHD_II 424 465 - -
Phco9g00980 1738 Pfam DDT domain 199 255 IPR018501 -
Phco9g00980 1738 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 1198 1228 IPR017896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00980 Phco-Chr9 8079024 8096764 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Phco9g00980 DDT 7.8e-12 No_clan