Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00970 ATGGAAGCGGTGGCCGCCGTTTTTCTATTCGCCGCCGCGCTTCTGTCGGTGGGGGAGGGTTCGCCTGTGACTCTGACGCTGGAAAGAACATTTCCTTCGAATCACGGCGTGGAGCTGAATCAGCTCAGAGCGTGGGACAGCCTCAGACATCGTAGAATGTTGCAGTCTACTAACTATGTTGTAGATTTCCCTGTCAAAGGCGCCTTCGATCCCTCACAAGTCGGGCTTTACTATACCAAGGTAAAAATGGGTACTCCTCCAAGGGAATTTTATGTGCAGATTGACACTGGGAGTGATGTTCTCTGGGTTAGTTGTGGGTCCTGCAATGGTTGTCCTCAGACAAGTGGGCTGCAAATTCAGCTCAATTACTTTGAACCTAGGAGTTCATCAACATCCTCATTGATCTCTTGTTCAGACCGGAGGTGCAAGAACGGAGTACAGTCCTCCGATGCAAGTTGTTCCGGTCAGAACAACCAGTGCACTTACACGTTCCAGTATGGAGATGGCAGTGGGACATCAGGCTATTATGTGTCAGACTTGATGCATTTTGCTAGTATTTTTGAGGGATCCTTGACAACAAATTCTTCGGCATCTGTAGTTTTTGGTTGTAGCATCCAGCAGACTGGGGACTTAACAAAGTCTGATAGAGCAGTTGATGGGATATTTGGATTTGGGCAACAAGGCATGTCTGTCATTTCCCAACTCTCATCGCAAGGAATTGCACCAAGAGTGTTCTCTCATTGCTTAAAAGGAGATAATAGTGGTGGGGGTGTCTTGGTTCTTGGTGAAATTGTGGAGCCAAACATAATTTATACTCCACTTGTTCCATCACAGCCTCATTACAATTTATATCTGCAGAGCATCTCTGTCAATGGCCAGCTTTTGCAAATTGACCCTGCAGTTTTTGCTACATCAAACAACAGAGGTACCATTGTTGATTCTGGAACAACTTTGTCCTACCTTGCAGAAGAGGCTTATACAACCTTTGTGAATGCGATTACAGCAGCTATTCCACAATCTGTACGTAGTGTTCTTTCTAGGGGAAATCAGTGTTACTTAATAACCAGCTCCAGCAATGTTGACATTTTTCCTCAAGTAAGTCTGAACTTCGCTGGTGGTGCATCTCTGGTTTTAAGACCACTGGACTACCTTATTCAACAGAATTATATTGGTGAGGGTTCAGTTTGGTGTATTGGCTTTCAGAAAATCCCGGGTGAAAGTGTAACTATTCTAGGAGATCTCGTATTAAAAGACAAAATTTTTGTCTATGATCTTGCTGGTCAACGCATTGGATGGGCTAATTATGACTGTTCACTGCCTGTGAATGTATCTGCATCGACTGGTAGGGGCAGAAGTGAGTTTGTAGATGCAGGAGAGCTAGGTGGAAGCACTTCTTTATGTGATGGACCTCACACTTTGATAAGGACATTGTTCCTTGCTCTGTTCATGCATATAACACTAATTTTGTAG 1470 0.4442 MEAVAAVFLFAAALLSVGEGSPVTLTLERTFPSNHGVELNQLRAWDSLRHRRMLQSTNYVVDFPVKGAFDPSQVGLYYTKVKMGTPPREFYVQIDTGSDVLWVSCGSCNGCPQTSGLQIQLNYFEPRSSSTSSLISCSDRRCKNGVQSSDASCSGQNNQCTYTFQYGDGSGTSGYYVSDLMHFASIFEGSLTTNSSASVVFGCSIQQTGDLTKSDRAVDGIFGFGQQGMSVISQLSSQGIAPRVFSHCLKGDNSGGGVLVLGEIVEPNIIYTPLVPSQPHYNLYLQSISVNGQLLQIDPAVFATSNNRGTIVDSGTTLSYLAEEAYTTFVNAITAAIPQSVRSVLSRGNQCYLITSSSNVDIFPQVSLNFAGGASLVLRPLDYLIQQNYIGEGSVWCIGFQKIPGESVTILGDLVLKDKIFVYDLAGQRIGWANYDCSLPVNVSASTGRGRSEFVDAGELGGSTSLCDGPHTLIRTLFLALFMHITLIL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00970 489 SUPERFAMILY Acid proteases 74 439 IPR021109 -
Phco9g00970 489 ProSiteProfiles Peptidase family A1 domain profile. 77 433 IPR033121 -
Phco9g00970 489 Pfam Xylanase inhibitor C-terminal 280 433 IPR032799 -
Phco9g00970 489 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Phco9g00970 489 PRINTS Pepsin (A1) aspartic protease family signature 310 321 IPR001461 GO:0004190|GO:0006508
Phco9g00970 489 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Phco9g00970 489 CDD pepsin_A_like_plant 77 437 IPR034161 -
Phco9g00970 489 FunFam Aspartic proteinase-like protein 2 264 444 - -
Phco9g00970 489 PANTHER ASPARTYL PROTEASES 22 431 IPR001461 GO:0004190|GO:0006508
Phco9g00970 489 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Phco9g00970 489 Gene3D Acid Proteases 51 263 IPR021109 -
Phco9g00970 489 Gene3D Acid Proteases 264 442 IPR021109 -
Phco9g00970 489 FunFam Aspartic proteinase-like protein 2 60 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00970 Phco-Chr9 7973892 7978526 Dispersed/Wgd