Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00968 ATGGAAGCACTCGAAGCAACGGATAAACGTTTATCTGATTTTGCAAACAAACTTTGCCTTCCCTTTGAGTTTTTTCCAGTAGTCGAGAAAGTCGGGAACCTTGACCTTGAGAGGCTCAATGTTAGCAAAACCGAAGCTATTGACTGTGATGTCGCAAGATGGTGGCGGAAGGCAAAACTGGACGTAGAGGATCCGAGTGCAACTACACCGCAACCAAACAGATCTATTTTCTCACTTTCGCTCATTTCGCATTTTGGCCAACTCACCATTGTTCTCGGGACGAGGCCTCACGCGATAACTATCCGAATGGCTCCGTTTCCGTCTGAGAATGGCGTCGAAGGAGACGACGAGAGAGAAGAGGAAGACGAAGAGGAAGAAGAAGAGGAAGAAGAAGAAGTGGAAGATGAAGAAGACGAAGAGGAACCGAGGCTCAAGTACCAGAGAATGGGAGGTAGCATACCTTCGCTGCTAGCGAGTGACGCCGCGTCGTGTATTGCCGTCGCCGAGCGGATGATCGCTCTCGGCACTCACGGTGGCACCGTTCACATCCTTGATTTTCTCGGGAATCAGGTTAAGGAATACTCTGCACATGCTTCTGTTGTCAACGACCTTAGCTTTGACATAGAAGGTGAATACATTGGAAGCTGTTCTGATGACGGATCAGTTGTGATAAACAGCCTTTTCACTGATGAGAAATTAAAGTTTGAGTACCATCGGCCAATGAAGGCAGTTGCGTTGGATCCAGATTATGCAAGGAAAATGTCCAGGAGATTTGTTGCTGGTGGTTTGGCTGGTCATTTATATTTAAATTCAAAGAAATGGTTGGGCTACCGCGATCAGGTTTTGCACTCTGCAGAAGGTTCAATACATGCTGTTAAATGGAGAGCAAGTCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTGTTACATTTATTGAAAAACCACGAGGGAGCCCACGCCCCGAGCTTTTACTTCCTCACCTGGTCTGGCAGGACGATACCCTCTTGGTTATTGGATGGGGAACATCTGTCAAAATTGCTTCAATAAGGACAAATCACCAAAGGGCAGCGAATGGGTCATTCAGGCAAGTTCCTCTTTCTGGTGTGGTCCAGGTGGACATTGTGGCATCTTTCCAAACCAGCTACTTCATCTCAGGGCTTGCTCCCTTTGGTGATGCTTTGGTTGTTCTTGCATATATTCCTGGAGAAGAAGATGGAGATAAGGATTTTAGTAGCTCTGCTCCTTCACGGCAGGGCAATGCACAAAGACCAGAAGTAAGAATAGTAACATGGAATAATGATGAGCTTTCTACAGATGCTCTGCCAGTACATGGGTTTGAGCATTACAGGGCGAAAGACTATTCTCTTGCACATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTTTACTATATTGTATCTCTGAAAGATGTAGTTATTGCCAAGCCAAGGGATACTGAAGATCATATTGCGTGGCTTCTTCAGCATGGGTGGCATGAAAAAGCATTGGCTGTGGTTGAATCTGGTCAGGGACGAAGTGAACTGCTTGATGAGGTGGGATCTAGGTACCTTGATCATCTGATTGTGGAAAGGAAATACAGTGAAGCAGCATCTCTGTGTCCCAAGTTGCTTAGGGGATCAGCTCCAGCTTGGGAGAGATGGGTTTTCCACTTTGCACATCTTCGTCAACTCCCTGTTTTAGTTCCTTACATGCCTACAGAAAACCCCAGACTACGTGATACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATTCTTCTTTTCATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCTTCTGTAATTTATTCTGCATTACCTGTAATTTCAGCCATTGAACCTCAGCTAAATACTTCCTCCATGACTGATTCACTTAAGGAGGCATTGGCAGAGTTGTATGTAATCAAAGGGCAATATGAGAAGGCCTTCTCGTTGTATGCTGATCTTATGAAGCCAGAAGTATTTGATTTTATTGATAAACATAGCCTACATGATGCAATTCGTGGAAAGGTTGTTCAACTAATGATGCTAGATTGCAAGCGTGCAGTTCCTCTGTTGATCCAAAATAGGGACTTAATAAGTCCACCTGAAGCTGTGAAGCAACTTCTAAATGCTGATGATAAGTGTGATCGTAGATATTTTTTACATTTGTATCTCCATTCATTATTTGAAGTAAATCATCATGCTGGGAAAGATTTCCATGACATGCAGGTAGAACTCTATGCAGAGTATGATCCAAAGATGCTATTACCTTTTCTTCGTAGCAGTCAACATTACACCCTTGAGAAGGCTTATGAAATTTGCATTAAAAGGGACCTATTGAGGGAGCAAGTCTTCATCTTAGGAAGGATGGGAAACTCAAAACAAGCCCTAGCTGTTATTATAAACAATTTGGGGGATATAGAGGAGGCTGTAGAGTTTGTCACCATGCAGCATGATGATGAACTTTGGGAAGAATTGATCAAGCAATGCCTTCACAAACCTGAAATGGTGGGCATATTATTGGAGCACACAGTTGGAAATCTCGATCCCCTCTACATTGTAAATAAGGTTCCTAACGGGTTGGAAATACCCCGGCTCCGGGATCGACTGGTTAAGATTATCACTGACTACAGGACTGAAACATCACTCAGGCATGGGTGCAATGATATTCTTAAGGCGGACTGTGTCAATCTTTTAATCAAGTATTACAAAGAGGCAAGGCATGGAGTTTCTTTAGGTAATGAAGAAGATGAGCCACGGGTTAAAATGAGTGACGCTCGTGCTTCTCAGGTATTTGAGAAATCCCCGAGTCTGAGAACTATGGAGATGAAGTCAAAGACTAGGGGAGGTGGAAGATGTTGTATATGTTTTGATCCATTTTCTATACAGAATGTATCGGTCATTGTTTTCTTTTGCTGTCATGGTTATCATACAAATTGTCTCATGGATTCCTCTTACACTAGTAGTAAAAAGAAACAAACCACGTCCCTAGAGGCAGAAATGTATGATGATTACAATGGTTATGAGGACGATGCTAACGAAGACTTTGAAGATGAAGAAACCACGTCGCGTGGCCCTCGAATGCGCTGTATATTGTGTACTACTGCTGCTAGTTGA 3180 0.4381 MEALEATDKRLSDFANKLCLPFEFFPVVEKVGNLDLERLNVSKTEAIDCDVARWWRKAKLDVEDPSATTPQPNRSIFSLSLISHFGQLTIVLGTRPHAITIRMAPFPSENGVEGDDEREEEDEEEEEEEEEEVEDEEDEEEPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEYSAHASVVNDLSFDIEGEYIGSCSDDGSVVINSLFTDEKLKFEYHRPMKAVALDPDYARKMSRRFVAGGLAGHLYLNSKKWLGYRDQVLHSAEGSIHAVKWRASLVAWANDAGVKVYDTANDQRVTFIEKPRGSPRPELLLPHLVWQDDTLLVIGWGTSVKIASIRTNHQRAANGSFRQVPLSGVVQVDIVASFQTSYFISGLAPFGDALVVLAYIPGEEDGDKDFSSSAPSRQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYRAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSLKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYSEAASLCPKLLRGSAPAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNSSFHKDLLSTVKSWPSVIYSALPVISAIEPQLNTSSMTDSLKEALAELYVIKGQYEKAFSLYADLMKPEVFDFIDKHSLHDAIRGKVVQLMMLDCKRAVPLLIQNRDLISPPEAVKQLLNADDKCDRRYFLHLYLHSLFEVNHHAGKDFHDMQVELYAEYDPKMLLPFLRSSQHYTLEKAYEICIKRDLLREQVFILGRMGNSKQALAVIINNLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGVSLGNEEDEPRVKMSDARASQVFEKSPSLRTMEMKSKTRGGGRCCICFDPFSIQNVSVIVFFCCHGYHTNCLMDSSYTSSKKKQTTSLEAEMYDDYNGYEDDANEDFEDEETTSRGPRMRCILCTTAAS 1059
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00968 1059 SUPERFAMILY WD40 repeat-like 159 352 IPR036322 GO:0005515
Phco9g00968 1059 Coils Coil 112 141 - -
Phco9g00968 1059 Pfam Region in Clathrin and VPS 715 856 IPR000547 GO:0006886|GO:0016192
Phco9g00968 1059 SUPERFAMILY RING/U-box 967 1011 - -
Phco9g00968 1059 FunFam Vacuolar protein sorting-associated protein 41 homolog 654 919 - -
Phco9g00968 1059 PIRSF Vps41 98 1015 IPR016902 GO:0034058|GO:0046907
Phco9g00968 1059 SMART ring_2 974 1054 IPR001841 -
Phco9g00968 1059 MobiDBLite consensus disorder prediction 113 140 - -
Phco9g00968 1059 FunFam Vacuolar protein sorting-associated protein 41 homolog 111 385 - -
Phco9g00968 1059 CDD RING-H2_Vps8 972 1006 - -
Phco9g00968 1059 Gene3D Tetratricopeptide repeat domain 718 921 IPR011990 GO:0005515
Phco9g00968 1059 PANTHER VACUOLAR PROTEIN SORTING VPS41 115 1054 IPR045111 GO:0006623
Phco9g00968 1059 MobiDBLite consensus disorder prediction 103 144 - -
Phco9g00968 1059 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 713 860 IPR000547 GO:0006886|GO:0016192
Phco9g00968 1059 SMART CLH_2 713 860 IPR000547 GO:0006886|GO:0016192
Phco9g00968 1059 SMART WD40_4 187 226 IPR001680 GO:0005515
Phco9g00968 1059 SMART WD40_4 275 311 IPR001680 GO:0005515
Phco9g00968 1059 Gene3D - 73 382 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00968 Phco-Chr9 7934912 7953168 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Phco9g00968 Clathrin 3.5e-22 CL0020
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00968 9 7934912 7953168 Phco9g00968 9 7934912 7953168 ECH