Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g00958 | ATGAAGGCACAATCACAAATATGTGATTCTCCAGGTAGAACTCGATCACAAAAGGCTCAAAATTTGGTTCAGGTCTCTACCAATTCATCTCACAGGCGATACAAAAAGTCTGATTTACCAAAAATTAAAAACCTCAATGAAGATATTGGTGCTGCTCTAAATGAGAAGGAAGTAAAGAGTGATTTGGTGGATGCAAAGAAACTTAAAAGTCAAGTGTGTGAAGAAACAACAGTGTTTGTTGTTTGTGAAAAGGAGCACAAGAGTGATGAAACTAAAAGCCAAGTGCAGAATGAAGGTGAAAAGGAACACAAGAATGATGAACTTGAGACTGGGGTTATGCAAATGCAACCTGTTAGTGATAATGATAAGCTAAAGGAGGAAGGTGACAATAATGAGATTGTTCCAATTTTGGATTGCCAGTTGGAAACCCCAATAAAGGGTATACAATCAACATTGAAAAAGTTAGAAAATGGTGATAGAAATGTTAAGAGTAATGGTTCTATGATTACTACTTCAACTCCGAGGACATTTTCTAAAGGTTTTATGGCAAAAAAGTTTCCTTCCAAGCTAAAAGACCTTTTATCTTCTGGGATTCTAGAAGGACTACTTGTGAAATATGTTCGCAGCATCAAGGTGAAATCTATAGGGCTTTTGGGAGTTATTTTTGGCGCTGGAATTTTGTGTTATTGTGAAGTTTGTAACAAGGTTGAGGTTGTGTCACCCACAGTTTTTGAGTTGCATGCTTGTAGTACAAACAAGCGTCCTCCTGAGTATATTTTCCTGGAGAATGGAAGTAGTCTTCGTGATGTCATGAATACATTTTTGAATACTTCATTAGACACTTTAGAGGAAGTTGTTCAGAAGGTTTTGGGAGGTTTCACAATGAAGACATCTAAATTTTGTGTGAATTGTAGAGATTCCAATCTCGTATCCAAATTATTCTGTAAGTCATGTGTGGAGCTATTAAAGGATTGTCAAGCTAGTCTCACCTTAGCAAATGACACCAATAATACCTCTGTACCAGTTGCAGTTCAATCCAGTTTAGCTGTACTTCCAAATTCATTAAATCAAGGAATGAAACATAATACATCTCATAGGAAAGGAAGTGGAAGAATAACTAGGAAGGATCTACGCTTGCATAAGCTGGTCTTTGAGAAAGGTGGATTGCCAGATGGAACTAAAGTGGGATATTATATCCATGGAAAGAACTTATTATCCGGTTTCAAGAAGGGATTTGGAATTGTTTGTAGTTGTTGCAGTAGTAAGGTTAGTCCTTCTCAATTTGAAGCACATGCTGGTTGGGCATCGCGACGAAAGCCCTATGTGAACATATTTACATCTAATGGACAATCACTCCATGAGTTGTCTATCTCCTTGTCACAAGGTCGCAAATTTTCTACCAATGATAATGACGACCTCTGCAGTATATGTAGAGATGGAGGAAATCTTTTGTGTTGTGATGGATGCCCAAGAGCTTTTCACATAGATTGTGTACCTCTCCCATGTGTTCCAAGTGGTACTTGGTATTGTAGGTATTGTCAAAATTTGTTTCAAAAGAGCAAATATATTAAGTTTAATGAAAATGACAAGGCAACAGGAGAAGTTGAGGGCATTGATCCCTTAGAAAAGATAAACCAAAGATGCATTCGTATTGTCAAAGAGTTTGAACTTGGTGGATGTGCATTGTGTAGAGACCAAGATTTCAGTACAAGCTTTGGACCTCGAACAGTAATTATTTGTGATCAGTGTGAAAAAGAGTATCATATTGGGTGTTTGAAGGATCATAATATGCAGAACATAGAGGAATTACCTGAAGGGGATTGGTTTTGCTCTTCAGATTGTGAGCACATTAATACTACCTTGGTGAATTTGGTGGCTCGTGGAGAAGAGAATCTTCCAAATCCCCTCTTGAGTCTGATTAAAAAGAAATACAATGACAAAGGTTTAGAATTTGGGCTTGATATTGATATCAAATGGAGGCTTCTGAACTGGAAAGTGGGTAAATCTGAGGAGACTAGACAATTGCTTTCAAAAGTTGTTGCTATTTTTCATGAGCGATTTAATCCAATAGTTCATACTACAACTGGCACTGATTACATTCCAACAATGCTTTTTGGAAGGAACATTAAAGGCGAAGACTTTAGTGGGATGTACTGTATGTTACTCACTGTCAATGAAGTGGTCGTATCTGCTGGAGTATTTCGTGTGTTTGGATCAGAACTGGCAGAACTTCCCTTAGTGGCAACTGTTACCGACTTTCAGGGACAGGGTTACTTCCAATCCCTGTTCTCTTGTATTCAGGGTTTGCTTGGATCATTAAAAGTGAAAAAGTTTGTTCTACCTGCTGCTGCTGAAGCTGAATCAATATGGACTGGTAAATTTGGGTTTACAAAACTGGAAAAAGATGAGATCAACAACTATTGGAAATATTATCACATGATGATCTTTCAAGGGACCTCCTTATTGCATAAGCAAATTCCTCAACTTTGA | 2490 | 0.3767 | MKAQSQICDSPGRTRSQKAQNLVQVSTNSSHRRYKKSDLPKIKNLNEDIGAALNEKEVKSDLVDAKKLKSQVCEETTVFVVCEKEHKSDETKSQVQNEGEKEHKNDELETGVMQMQPVSDNDKLKEEGDNNEIVPILDCQLETPIKGIQSTLKKLENGDRNVKSNGSMITTSTPRTFSKGFMAKKFPSKLKDLLSSGILEGLLVKYVRSIKVKSIGLLGVIFGAGILCYCEVCNKVEVVSPTVFELHACSTNKRPPEYIFLENGSSLRDVMNTFLNTSLDTLEEVVQKVLGGFTMKTSKFCVNCRDSNLVSKLFCKSCVELLKDCQASLTLANDTNNTSVPVAVQSSLAVLPNSLNQGMKHNTSHRKGSGRITRKDLRLHKLVFEKGGLPDGTKVGYYIHGKNLLSGFKKGFGIVCSCCSSKVSPSQFEAHAGWASRRKPYVNIFTSNGQSLHELSISLSQGRKFSTNDNDDLCSICRDGGNLLCCDGCPRAFHIDCVPLPCVPSGTWYCRYCQNLFQKSKYIKFNENDKATGEVEGIDPLEKINQRCIRIVKEFELGGCALCRDQDFSTSFGPRTVIICDQCEKEYHIGCLKDHNMQNIEELPEGDWFCSSDCEHINTTLVNLVARGEENLPNPLLSLIKKKYNDKGLEFGLDIDIKWRLLNWKVGKSEETRQLLSKVVAIFHERFNPIVHTTTGTDYIPTMLFGRNIKGEDFSGMYCMLLTVNEVVVSAGVFRVFGSELAELPLVATVTDFQGQGYFQSLFSCIQGLLGSLKVKKFVLPAAAEAESIWTGKFGFTKLEKDEINNYWKYYHMMIFQGTSLLHKQIPQL | 829 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g00958 | 829 | SUPERFAMILY | FYVE/PHD zinc finger | 559 | 612 | IPR011011 | - | |
| Phco9g00958 | 829 | Gene3D | - | 656 | 826 | - | - | |
| Phco9g00958 | 829 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
| Phco9g00958 | 829 | Pfam | PHD-finger | 474 | 515 | IPR019787 | - | |
| Phco9g00958 | 829 | MobiDBLite | consensus disorder prediction | 84 | 109 | - | - | |
| Phco9g00958 | 829 | SUPERFAMILY | Acyl-CoA N-acyltransferases (Nat) | 710 | 801 | IPR016181 | - | |
| Phco9g00958 | 829 | SMART | PHD_3 | 473 | 514 | IPR001965 | - | |
| Phco9g00958 | 829 | SMART | PHD_3 | 559 | 614 | IPR001965 | - | |
| Phco9g00958 | 829 | Pfam | Tify domain binding domain | 407 | 455 | IPR032308 | - | |
| Phco9g00958 | 829 | Pfam | Tify domain binding domain | 219 | 272 | IPR032308 | - | |
| Phco9g00958 | 829 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 466 | 534 | IPR013083 | - | |
| Phco9g00958 | 829 | ProSiteProfiles | Zinc finger PHD-type profile. | 471 | 516 | IPR019787 | - | |
| Phco9g00958 | 829 | CDD | PHD1_AIRE | 473 | 513 | - | - | |
| Phco9g00958 | 829 | MobiDBLite | consensus disorder prediction | 84 | 110 | - | - | |
| Phco9g00958 | 829 | ProSitePatterns | Zinc finger PHD-type signature. | 474 | 513 | IPR019786 | - | |
| Phco9g00958 | 829 | MobiDBLite | consensus disorder prediction | 1 | 30 | - | - | |
| Phco9g00958 | 829 | PANTHER | AUTOIMMUNE REGULATOR | 22 | 825 | - | - | |
| Phco9g00958 | 829 | SUPERFAMILY | FYVE/PHD zinc finger | 461 | 516 | IPR011011 | - | |
| Phco9g00958 | 829 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 558 | 617 | IPR013083 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco9g00958 | Phco-Chr9 | 7798356 | 7808785 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Phco9g00958 | TDBD | 1.5e-14 | No_clan |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Phco10g01462 | 10 | 37295455 | 37303146 | Phco9g00958 | 9 | 7798356 | 7808785 | PCT |