Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00954 ATGATGCCAAAGGCTACATCTACCTCCACAAACGATTTTCAAGCACTTCACATGTTTCCTGTGAATGAATATTTGGTTTCATCGTCTCTTGAACTAAGCTCTTCCTCAGCTTCACACTCTTCTACCTCCCTCCTCTGCTATCTTTCTCTTCTGAAGGACAAGCTAGGTCAGTTGCAGAACCTGGTTGATGTTTTTGTGTCCCCTCAACATAACCTACCCGAGTCAACTCCCATGGCAATCTCCACCATGAACTCAACACTCCAAGAAATCATAGTGGCAGCCACTTCAATGAGATTCACCTGTCAGCAAATGACTCTCGGTTCCTCTTCAGGTACTACTAGTATTGCTAATGAATTGCACCGAAACCAGAATCAGCAACAACTTGATCATGATAGATTATTATCATTATCACCTCATCATCCATCAAACTTTGGCAACAACAATAGGGGTATGGTTAGTATGAGCAGCATTAGCATGAGCTCAGATATGATTAAAGGGCAAAGTGACTTCTTATCAAGTATTGAAGGAGGGGCACTGGATTGGTTTGCTGAAAGCTATAATAATAACAATAGTGGCGATTATAACATTAAGGATGAAGAAGCCGATATCAACGTGATGGTAGAGAGTGATATAATCGAATTGGATGCTGCGGATTTGTTGGCAAAGTACTCGTATTTTTGCCAAGTGTGTGGGAAAGGATTCAAACGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGAAGAGTACAAAACAACTGCAGCCTTGAGCAACCCAATGAAAAGCAGGGATAGTTTATTGGGTGAGGGAAGCTCCACCAAGAAATTTTCGTGCCCTCAAGAAGGGTGTAGGTGGAACCAAAAACATGCCAAGTTCCAACCCTTGAAGTCAATGATTTGTGCTAAAAACCATTACAAGAGGAGCCACTGCCCCAAGATGTACGTGTGCAATAGGTGCAACCATAAACAGTTTTCGGTGCTTTCTGATTTGAGGACACATGAGAAGCACTGTGGGGACCCCAAGTGGCAGTGCTCGTGTGGCACAACGTTTTCTAGAAAAGACAAGCTCATGGGCCATGTTGCTTTGTTCGTGGGGCACACCCCAGCTATTCATGGCTTTTCAAGATATGTTCGATGA 1140 0.436 MMPKATSTSTNDFQALHMFPVNEYLVSSSLELSSSSASHSSTSLLCYLSLLKDKLGQLQNLVDVFVSPQHNLPESTPMAISTMNSTLQEIIVAATSMRFTCQQMTLGSSSGTTSIANELHRNQNQQQLDHDRLLSLSPHHPSNFGNNNRGMVSMSSISMSSDMIKGQSDFLSSIEGGALDWFAESYNNNNSGDYNIKDEEADINVMVESDIIELDAADLLAKYSYFCQVCGKGFKRDANLRMHMRAHGEEYKTTAALSNPMKSRDSLLGEGSSTKKFSCPQEGCRWNQKHAKFQPLKSMICAKNHYKRSHCPKMYVCNRCNHKQFSVLSDLRTHEKHCGDPKWQCSCGTTFSRKDKLMGHVALFVGHTPAIHGFSRYVR 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00954 379 FunFam Zinc finger protein 574 224 248 - -
Phco9g00954 379 SUPERFAMILY beta-beta-alpha zinc fingers 223 251 IPR036236 -
Phco9g00954 379 SMART c2h2final6 315 337 IPR013087 -
Phco9g00954 379 SMART c2h2final6 225 247 IPR013087 -
Phco9g00954 379 SMART c2h2final6 277 310 IPR013087 -
Phco9g00954 379 ProSiteProfiles Zinc finger C2H2 type domain profile. 225 252 IPR013087 -
Phco9g00954 379 ProSitePatterns Zinc finger C2H2 type domain signature. 227 247 IPR013087 -
Phco9g00954 379 Gene3D Classic Zinc Finger 221 249 - -
Phco9g00954 379 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 34 371 IPR044300 GO:0010044|GO:0010447
Phco9g00954 379 Gene3D Classic Zinc Finger 313 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00954 Phco-Chr9 7768448 7769587 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco9g00954 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01467 10 37329706 37330950 Phco9g00954 9 7768448 7769587 PCT