Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00952 ATGGAGATGGAAGGGTTATATTCTAATTCTAATTCCAATTCCAATTCCAGTTCTACCCAGAGCAACATAGCCAAGGGCAAACGCACCAAAAGGATGAGGCTTTTGTCCCCTTCTGGTGTCGTCGTTGCTAGCACCGCCGCCACTGGATTCACCACCACTAGTTGCTCCAGTCCTAATTCTGGTGGCTCCTCCACCACCACTTATGAGAGCGAAGAGGAAGACATGGCAAATTGTTTGATTCTCTTGGCCCAGGGAGGGGAATCTCACCATCATCAACCTCGTCATCACAAGCAACAAGTTGAAGATCATGGTCTTGGAGATTGTAACGGTGGCAAGACAGAAAAGGGTAACGGTAACACCACCAACACCACCGCAACAGCCGCAGTTAACACCAAAGTTGGGTTCTTTATTTATGAGTGCAAAACGTGTAACCGAACGTTCCCTTCGTTTCAAGCTCTTGGTGGACACAGGGCGAGTCACAAAAAGCCCAAACTCGTGGGTGAGGAGAAAAAAACACCACCCTCTCAATTGCAGCACATGTTTGTTACCAAGTATGATCGGTTCGAAGAGGATAACGTTAAAAGTGGTCCTCCAATTTCCCTTCAATTGGGTCATGGCAACAACAGCAAGGGTAAGATTCATGAATGTTCCATTTGTGGTTCTGAATTCTCATCCGGACAAGCATTGGGTGGACACATGAGGAGGCATAGGGCATCAACAAACACCAACACTGTTGACACAAGTTCTAACACCGTCACCGCTGTCGCCACTATTGTTTCGCCGCCGCGTAACATCTTACAATTGGATCTTAACCTCCCGGCGCCGGAGGATGATATCCGGGAGGCCAAGTTTCAATTTCCCGTAACAACTCAGATTGTGGTTGGTACTCCGGCTTTGGTAGATTGTCTTTATTAG 915 0.4754 MEMEGLYSNSNSNSNSSSTQSNIAKGKRTKRMRLLSPSGVVVASTAATGFTTTSCSSPNSGGSSTTTYESEEEDMANCLILLAQGGESHHHQPRHHKQQVEDHGLGDCNGGKTEKGNGNTTNTTATAAVNTKVGFFIYECKTCNRTFPSFQALGGHRASHKKPKLVGEEKKTPPSQLQHMFVTKYDRFEEDNVKSGPPISLQLGHGNNSKGKIHECSICGSEFSSGQALGGHMRRHRASTNTNTVDTSSNTVTAVATIVSPPRNILQLDLNLPAPEDDIREAKFQFPVTTQIVVGTPALVDCLY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00952 304 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Phco9g00952 304 SMART c2h2final6 138 160 IPR013087 -
Phco9g00952 304 SMART c2h2final6 214 236 IPR013087 -
Phco9g00952 304 Gene3D Classic Zinc Finger 135 236 - -
Phco9g00952 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Phco9g00952 304 MobiDBLite consensus disorder prediction 51 70 - -
Phco9g00952 304 PANTHER ZINC FINGER PROTEIN ZAT5 62 288 - -
Phco9g00952 304 ProSiteProfiles Zinc finger C2H2 type domain profile. 214 241 IPR013087 -
Phco9g00952 304 SUPERFAMILY beta-beta-alpha zinc fingers 138 236 IPR036236 -
Phco9g00952 304 ProSitePatterns Zinc finger C2H2 type domain signature. 216 236 IPR013087 -
Phco9g00952 304 MobiDBLite consensus disorder prediction 94 109 - -
Phco9g00952 304 MobiDBLite consensus disorder prediction 1 25 - -
Phco9g00952 304 MobiDBLite consensus disorder prediction 1 30 - -
Phco9g00952 304 MobiDBLite consensus disorder prediction 86 121 - -
Phco9g00952 304 Pfam C2H2-type zinc finger 214 238 - -
Phco9g00952 304 Pfam C2H2-type zinc finger 138 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00952 Phco-Chr9 7750179 7751093 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco9g00952 zf-C2H2_6 1.2e-11 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02074 2 51495436 51496572 Phco9g00952 9 7750179 7751093 ECH
Phco6g00705 6 7022500 7023291 Phco9g00952 9 7750179 7751093 ECH
Phco10g01468 10 37342753 37343667 Phco9g00952 9 7750179 7751093 ECH
Phco9g00952 9 7750179 7751093 Phco9g00952 9 7750179 7751093 ECH
Phco10g01468 10 37342753 37343667 Phco9g00952 9 7750179 7751093 PCT