Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00949 ATGGACCCAACCCATCTTCATCAAGAGACTCTACTGCACATTGATGACTTTGAGCTACACGACTTTGTTGAAGATCCCAACTTAGATGAGTTGATCAATTTGATTCGTTCTGAGAAGAAAGATGCCATTTGTGACTTCAATTCTGAGCTTATCAATGAAGCATTTATTGATAACTCTTTCTTGGCACCCCCTGCAATCCCATCTGATCACTGCAATAGTAATGCTGTCAATGTCTATGATTCATACTCTACACTTAACTCCTTCGCTTATTTTGATGGGGAAGCTAAAGGAGGAGGGGGAGGAGAAGAGGAAGATGACATGGAGCACTCCTCTGCAACAACAAGCACAACAACACCTTCTAAGAGTCTTGTTCCTAAGTCAAGACCAAAAACTGACAGGACCAAAACTTTGATTTCTGAGAGGAGAAGAAGAGAAAGAATGAAGGAAAAGCTTCATGCATTGAGATCTTTGGTTCCCTTCATAACTAAGATGGATAAGGCCTCTATCATTGGAGATGCTGTGTCATATATGCATGAGCTTCAAGCACAAGCCAATATGCTTAAAGATGAGGTTGAAGGACTTGAAACATCCTTACTGGTGTCTAAAAATTACGAAGGATCAAATGAAAATCTCAAGAATGTTGAATTTAACAGCCTTTCAATATGCAAGAAGATTATCCAGATGTACATGTTTCAAGTGGATGCAAAAGGGTTTTATGTGAAAATAGTTTGCAACAAAGGAGAAGGAGTGGCTGCCTCATTGTACAAATCTATAGAGTCTCTGAGAGGCTTCCATGTTCAGAATTCAAACTTATCCACAGTTTGTAACACTTTTCAACTTACATTTTCATTGAATGTGAAAAGCTCTGAGCCAGAAATGAACCTGCACAACTTGAAGATTTGGGTGTCTGAAGCTTTTGTGAAGCAAGGCTTTGAATTCATACCATTTTTAATGCTAGACTCTTTGAATCTATAA 975 0.3867 MDPTHLHQETLLHIDDFELHDFVEDPNLDELINLIRSEKKDAICDFNSELINEAFIDNSFLAPPAIPSDHCNSNAVNVYDSYSTLNSFAYFDGEAKGGGGGEEEDDMEHSSATTSTTTPSKSLVPKSRPKTDRTKTLISERRRRERMKEKLHALRSLVPFITKMDKASIIGDAVSYMHELQAQANMLKDEVEGLETSLLVSKNYEGSNENLKNVEFNSLSICKKIIQMYMFQVDAKGFYVKIVCNKGEGVAASLYKSIESLRGFHVQNSNLSTVCNTFQLTFSLNVKSSEPEMNLHNLKIWVSEAFVKQGFEFIPFLMLDSLNL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00949 324 MobiDBLite consensus disorder prediction 96 136 - -
Phco9g00949 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 198 IPR036638 GO:0046983
Phco9g00949 324 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 59 306 - -
Phco9g00949 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 131 180 IPR011598 GO:0046983
Phco9g00949 324 Gene3D - 124 197 IPR036638 GO:0046983
Phco9g00949 324 MobiDBLite consensus disorder prediction 111 125 - -
Phco9g00949 324 Coils Coil 177 197 - -
Phco9g00949 324 Pfam Helix-loop-helix DNA-binding domain 134 181 IPR011598 GO:0046983
Phco9g00949 324 SMART finulus 137 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00949 Phco-Chr9 7716496 7717838 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco9g00949 HLH 2.5e-10 No_clan