Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00906 ATGAGCAGCTTAAGGCCTGAATTGCATGTTGCCCAACAACTTCGGCGGGACAAATTGAGGATCCAAAACAGTTCCCAACATTTGCAGGAGTTCCCTAGCAACCTAGAACAGTTATCGTTACACCCAGGTTTCAACTTGGATCTTCTTCAAGTGAGAAATGTTCGAAACGGAAACATGCTCGACGAGGCCCTTTATTCATCGGATATGATAACTTTTTCCACTGCTTCGAATCCTTTATCTACTCCTAGAAACCCGTTGGAGTGTCAAGAGTTGATGATGGCTCAGTATGGTTCCACGTCCTTTCCTCATTCATCATCCCCTAAGGACCAACAATGTGGACCACGCCACTTGGGTGCTAATTGGATGGTGAATTATAACGAAAGCAACACGAACACCAACAACAACACCTTCTTCTCTTCTGAGCTTAATAACAATTCTTCTGGTGAAATAGCCAATAGAGAAATTCAGAAGCAGTTAGGTGAAATGCATTACCCCCCTTCGTCTTCTTCACCTCCTCTTTACCATAATGGTCTGCAGGACATGGCTTATGGCGTTTGGGGAGGGAACCATGCTGAGCCTGTGCTTCATTATCAAGCAAACAACGAGTTACGTTTTGGGGGAGCTAATTTATGGACAAATAGTAGCGGAATGGGTTTCAAAAAGAATAATGAACAAGACATAAATCCTCATCAGGGTTTGTCACTGTCACTTTCATCAAACTCACAATCCAAGCCTTGTTTTGAAGAAGGGTCTGCATCAGATGACCCTACACAATATTCAAAGTCAGTGAAGTGCTCCATGAAGCTGAACGTGCTTTCAAACAACACTGTTTATCGAAATGTTGGCCCCCTCGGTCCCTTCACCGGGTACGCCACGATTTTGAAGAGTTCAAGATTCTTGAAGCCGTGTCAACAGTTGTTAGATGAGTGGTGCTGTCAATATGGTTCAAAGTCTGCGAGAGGAGGGGGTTGTGACGTTCCAGAGTGGGTCTCTCGAGATGTCAGTGCTGCTTCTATTTCAGCAGCTGCAGCTGCTGGGGATGCTCTTAATGTTGATGAAAGTGAAGGTGCTGCAAAAGGTGGTGGCAATTTGGGTGTTTCATCCTCTGTGTTGTATAGTTCAAATGAAAATGACAATACAAATAGCGCTGATGGCGGAGCCACGAGTAGCTTTTGTCTTTCTTCTCGGCCAGAGTGCCAAAAGAACAAGGCAAAACTACTGTATATGCAAGATGAGGTTACTAGGAGATACAAGCAATACCATCAACAAATGCAAATGGTTGTTCAATCATTCGAGACTGTAGCGGGTCTTAGTTCGGCTACTCCGTATGTCTCCTTGGCTCTCAAGTCAGTATCCAAACACTTTAGATGCTTAAAAAATGCTATCTCAGATCAACTGAAGCTTACATGTGAAGTCTTGGGAGAGGACTTTTCATTGCCAACAACAAGTAGTGGTGGTAAATTTGACAATAATATGGCAAGGCTAAGGTGCATAGATCAAAGTTTTCAGAAACACAAATCTCTGGGGGCTAACATAAACTTTCTTGAGCCCCAACAACACGTATGGAGGCCCCAGAGAGGATTACCAGAACGATCAGTGGCAATTCTTAAAGCTTGGCTATTTGAGCATTTTCTTCATCCGTACCCTACGGACACTGATAAACACATGTTGGCTACCCAAACAGGTCTTTCAAGAAACCAGGTGTCAAATTGGTTCATAAATGCCCGAGTGCGTGTGTGGAAGCCAATGGTTGAGGAAATACACATGCTCGAAACAAAGGGTGCAACAGAACCCCGCCAAGCCTCTAATAAAAGTGACCAGGTAGCTTCTGCATCTGAAGGTAGCAACCAGCCCAAATCAGATCACCAACCTGTGAGCAGGTTTGGCACGCATGCATCATCACATGCAATCCATGACAATCAATTTCAGTGCTTGGAAATGGGGTCATCATCCTCAGCAGGAAATGAGGAACACATTGGAATGAATGAAGTCCAATGGAATCAAGAGAAGAGGTCAAAACTGGAATGCCAGATTGCTTCCACACCAAACATGGATGGGACAGTGATGGGGTTTATGCCGTACAGAAGAGGTGGACTTGAGGTTGGTGGTCTTGGATCTGTGTCACTCACTTTGGGTCTTAGGCATAGTGTTGAAGGTGTACAACAGCAACAACTGCAGCAAGAGGAGGATCTTAGGCGTCAGTTTGGAGGGCACATGATCCATGACTTTGTGGGCTAG 2238 0.4473 MSSLRPELHVAQQLRRDKLRIQNSSQHLQEFPSNLEQLSLHPGFNLDLLQVRNVRNGNMLDEALYSSDMITFSTASNPLSTPRNPLECQELMMAQYGSTSFPHSSSPKDQQCGPRHLGANWMVNYNESNTNTNNNTFFSSELNNNSSGEIANREIQKQLGEMHYPPSSSSPPLYHNGLQDMAYGVWGGNHAEPVLHYQANNELRFGGANLWTNSSGMGFKKNNEQDINPHQGLSLSLSSNSQSKPCFEEGSASDDPTQYSKSVKCSMKLNVLSNNTVYRNVGPLGPFTGYATILKSSRFLKPCQQLLDEWCCQYGSKSARGGGCDVPEWVSRDVSAASISAAAAAGDALNVDESEGAAKGGGNLGVSSSVLYSSNENDNTNSADGGATSSFCLSSRPECQKNKAKLLYMQDEVTRRYKQYHQQMQMVVQSFETVAGLSSATPYVSLALKSVSKHFRCLKNAISDQLKLTCEVLGEDFSLPTTSSGGKFDNNMARLRCIDQSFQKHKSLGANINFLEPQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGATEPRQASNKSDQVASASEGSNQPKSDHQPVSRFGTHASSHAIHDNQFQCLEMGSSSSAGNEEHIGMNEVQWNQEKRSKLECQIASTPNMDGTVMGFMPYRRGGLEVGGLGSVSLTLGLRHSVEGVQQQQLQQEEDLRRQFGGHMIHDFVG 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00906 745 ProSiteProfiles 'Homeobox' domain profile. 519 582 IPR001356 GO:0003677
Phco9g00906 745 CDD homeodomain 522 583 IPR001356 GO:0003677
Phco9g00906 745 Pfam Homeobox KN domain 539 578 IPR008422 GO:0003677|GO:0006355
Phco9g00906 745 SMART prehox3 288 464 IPR006563 -
Phco9g00906 745 SMART HOX_1 522 586 IPR001356 GO:0003677
Phco9g00906 745 MobiDBLite consensus disorder prediction 220 258 - -
Phco9g00906 745 Pfam Associated with HOX 293 463 IPR006563 -
Phco9g00906 745 MobiDBLite consensus disorder prediction 596 628 - -
Phco9g00906 745 Gene3D - 525 587 - -
Phco9g00906 745 MobiDBLite consensus disorder prediction 591 628 - -
Phco9g00906 745 SUPERFAMILY Homeodomain-like 524 588 IPR009057 -
Phco9g00906 745 FunFam BEL1-like homeodomain protein 9 525 587 - -
Phco9g00906 745 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 160 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00906 Phco-Chr9 7106757 7112173 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Phco9g00906 POX 1.8e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01492 10 37669099 37675068 Phco9g00906 9 7106757 7112173 PCT