Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00885 ATGATTTACCTTTATCCAAGGACATGGGAAGGGGAGTTTCAGTTGAGTTGCGCCAATTTCATTCCCCTGTCCTCTCTCTGTCACCGTGTTGCGAGCATGAAGGACTGGTTGTTTTTTGACAAGAATTTTAATGGTTTGTCGGACGATATTCTTGATGATGTCATGGACATCGAGCTTTTCGATTTGCCCCTTGAAGATGTGGAAACTGACGATGGTGTGGAACAAGATTGGGATGCTCAGTTCAAATTCATTGAAGAGCCTTCACTGGGAATTTTTCCTGTACAATCGTCTCAGCTCACTGCTCATACTCAAAATGAGTTTGTGAAAGTCGAAACGAGTTTCTCTGCTTCTCCAGCGAAGACGGCGGGACCTATATATAGCAAAAATATTCCTATCCAGAAAGTGTCTTTCAATGGAAAAGAATTGCACCAATTCCATACCAACAGCCCAGTTTCAGTTTTTGAAAGCAGTAGTAGTTCTCCCTCAGTTGAGAACTCTAACTTTGAGTTACCTGTTATCCCAACAAAGCGTCCCCGAAGCAAACGCAGGGCTCTCTCAAACATCACCCTGCTATACTCCAGTCCTTTCATCTGCACTTCACCGGCTTTTCAAAAATTTCAAAGAACAGCTGTCTCAAAATCAGATTTAGAAACACAACCATTTGGGAAATTGTCAAGCATGGTAAAAAAGCAGAGGAAAATGAATATTCCTCTGGTAGCTAACAAAGAGATGAAGCGATCCTCATCAGAGGAATCAGTTGCAGACAGAAAATGCTTGCATTGTGAGGTGACAAAGACACCACAATGGAGAGAGGGACCAATGGGTCCAAAGACCCTTTGCAATGCTTGTGGAGTTCGGTACCGGTCTGGCAGGCTCTTTGCTGAATACCGGCCTGCAGCTAGCCCCACTTTTGTAGGATCATTGCACTCTAACTCTCACAAGAAGGTCTTAGAAATTAGGAACAGAGCACCCAGGTGA 978 0.4387 MIYLYPRTWEGEFQLSCANFIPLSSLCHRVASMKDWLFFDKNFNGLSDDILDDVMDIELFDLPLEDVETDDGVEQDWDAQFKFIEEPSLGIFPVQSSQLTAHTQNEFVKVETSFSASPAKTAGPIYSKNIPIQKVSFNGKELHQFHTNSPVSVFESSSSSPSVENSNFELPVIPTKRPRSKRRALSNITLLYSSPFICTSPAFQKFQRTAVSKSDLETQPFGKLSSMVKKQRKMNIPLVANKEMKRSSSEESVADRKCLHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFAEYRPAASPTFVGSLHSNSHKKVLEIRNRAPR 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00885 325 PANTHER GATA TRANSCRIPTION FACTOR 72 322 - -
Phco9g00885 325 SMART GATA_3 252 302 IPR000679 GO:0006355|GO:0043565
Phco9g00885 325 CDD ZnF_GATA 257 304 IPR000679 GO:0006355|GO:0043565
Phco9g00885 325 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 255 315 - -
Phco9g00885 325 Pfam GATA zinc finger 258 291 IPR000679 GO:0006355|GO:0043565
Phco9g00885 325 ProSiteProfiles GATA-type zinc finger domain profile. 252 288 IPR000679 GO:0006355|GO:0043565
Phco9g00885 325 FunFam GATA transcription factor 247 325 - -
Phco9g00885 325 Gene3D - 252 302 IPR013088 GO:0006355|GO:0008270
Phco9g00885 325 ProSitePatterns GATA-type zinc finger domain. 258 283 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00885 Phco-Chr9 6890554 6899397 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco9g00885 GATA 6.6e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01510 10 37899911 37903645 Phco9g00885 9 6890554 6899397 PCT