Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00884 ATGAAGGAGGGTGAGAAGGTATTGGATCCGCAGCTATGGCATGCGTGTGCAGGTGGCATGGTTCAGATGCCGAAAGTGAACTCCAAAGTCTTCTACTTCCCTCAGGGTCACGCCGAACACGCTCACACCAACATTGATCTCAGGGTTCCGCCCCACATTCTCTGCAACGTCGAAGCCGTGAAGTTCATGGCGGACCCAGAAACCGACGAGGTCTTCGCCAAACTCAGTCTGGTTCCTCTCAGAAACTCGGAACTCGGTCCCGACTCGGAGGGGGGTGCTGATGTGGCGGAGGCTTCGGAGAAACCGGCGTCTTTCGCGAAGACTCTGACGCAGTCGGACGCCAACAATGGTGGCGGGTTTTCGGTGCCACGGTACTGCGCGGAGACGATTTTTCCGCGGCTGGACTACTCAGCGGAGCCGCCGGTGCAGACGGTGGTGGCGAAGGACGTGCAGGGGGAGACTTGGAGGTTCCGGCACATATACCGAGGGACGCCACGTCGCCACTTGCTGACGACAGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTGGCTGGGGATTCTGTGGTGTTTCTGAGGTCTGAGAATGGAGAGTTGTGTGTTGGGATTCGGAGGGCAAAGAAGGGAATTGGGTGTGAGGTGTGGAACTCTGCTTCTGGTTCAGGGTCTGGAAGTGTAGGTGGAAGTGGGAATTGTGGGATTGGTCCTTATGGGCCTTTCTCTTTTTTCATGAGAGAGGAGAGCAAGAGTTTAAGGAATGGTGGTGGTGGTGGTGGGAATTTGAGTGGAAGGGCCAAAGTGAGGCCTGAGGCTGTTGTTGAAGCTGTGACCCTGGCTGCTGGTAATAAACCTTTTGAGGTTGTTTATTATCCAAGAGCTAGTACTCCTGAGTTTTGCATTAAGGCTTCTTCTGTGAGGGCTGCTATGAGGATTCAGTGGTGTTCTGGGATGAGGTTCAAGATGGCCTTTGAGACTGAGGATGCTTCCAGGATAAGTTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTCTTGATCCCATCCGCTGGCCTAATTCCCCATGGAGGCTTCTTCAGGTAACTTGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCGTGGTTGGTTGAATTGGTATCAAACTTACCGGTCATCAATTTCACACCTTTCTCTCCACCAAGAAAGAAGCTGCGGTTTCCGCAGCACCCGGAGTTCCCCCTTGATGTTCAATTTCCAATACCAACGTTTTCCAGCAACCAGCTCGGGCCTAACCACCCCTTGTGTGGTTTTTCGGATAACCCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGATCATCACTATCAGATCTCCACCTTAACAAAAAACTGCAGCTGGGGTTGCTTCCATCTAATATCCAGCAACTTGGAGTGTATAGTGGGATTTCAAATGGTAACACCACCAACAACCATGATAAGAGCAAAGAAAGCTTATCACACTTGCTGTCCATGGGGAAATCTAGCAATAGTTTGGAGAAACCTGACGATGTTAAGAAACATCAGTTTTTGCTCTTTGGTCAGCCAATACTCACTGAGCAACAAATTTCTAGAGATGTGTTATCTCGTGGGAAAAAATCACCAGATGATGTTAAGGACAAAGAGAAGTGCGTTTTGGGTGACTCCCAATCTGCACTCTCACGGCAGTTTTCATCAGGGAAAGCTTCTGCTGCCGAGTTCTCTTGGCAACTTGGCTTGGATACTGGTCATTGTAAAGTTTTCTTGGAGTCAGAAGATGTAGGAAGGACCCTAGACCTATCACGGCTTGGTTCTTATGAAGAACTGTATAGGAGACTTTCCTACATGTTTGGAGTTGAAAGATCTGAGATTCTGAATTATGTGTTCTACTATGATGCCAAAGGTGCTGTTAAGCAAACTGGTGATGAACCCTTCAGTGACTTCATGAAGACAGCGAAAAGATTGACAATTCTGACGGATTCAGGCAGCAAAAATGTTAAAAGGGCCTTTATTACAGGAACTCGGAACGGTGAACATGGACTTGATGCGTCAAATAAGACAGGCCCTCTGAGCATATTTGCTTAA 2091 0.4916 MKEGEKVLDPQLWHACAGGMVQMPKVNSKVFYFPQGHAEHAHTNIDLRVPPHILCNVEAVKFMADPETDEVFAKLSLVPLRNSELGPDSEGGADVAEASEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVQGETWRFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFLRSENGELCVGIRRAKKGIGCEVWNSASGSGSGSVGGSGNCGIGPYGPFSFFMREESKSLRNGGGGGGNLSGRAKVRPEAVVEAVTLAAGNKPFEVVYYPRASTPEFCIKASSVRAAMRIQWCSGMRFKMAFETEDASRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNLPVINFTPFSPPRKKLRFPQHPEFPLDVQFPIPTFSSNQLGPNHPLCGFSDNPPAGIQGARHAQIGSSLSDLHLNKKLQLGLLPSNIQQLGVYSGISNGNTTNNHDKSKESLSHLLSMGKSSNSLEKPDDVKKHQFLLFGQPILTEQQISRDVLSRGKKSPDDVKDKEKCVLGDSQSALSRQFSSGKASAAEFSWQLGLDTGHCKVFLESEDVGRTLDLSRLGSYEELYRRLSYMFGVERSEILNYVFYYDAKGAVKQTGDEPFSDFMKTAKRLTILTDSGSKNVKRAFITGTRNGEHGLDASNKTGPLSIFA 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00884 696 Gene3D - 583 669 - -
Phco9g00884 696 FunFam Auxin response factor 313 386 - -
Phco9g00884 696 CDD B3_DNA 104 205 IPR003340 GO:0003677
Phco9g00884 696 Pfam Auxin response factor 275 358 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco9g00884 696 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 666 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco9g00884 696 SUPERFAMILY DNA-binding pseudobarrel domain 100 206 IPR015300 -
Phco9g00884 696 ProSiteProfiles B3 DNA-binding domain profile. 105 207 IPR003340 GO:0003677
Phco9g00884 696 ProSiteProfiles PB1 domain profile. 584 664 IPR000270 GO:0005515
Phco9g00884 696 MobiDBLite consensus disorder prediction 83 102 - -
Phco9g00884 696 Gene3D - 313 385 - -
Phco9g00884 696 Gene3D - 103 207 IPR015300 -
Phco9g00884 696 SMART B3_2 105 207 IPR003340 GO:0003677
Phco9g00884 696 FunFam Auxin response factor 103 207 - -
Phco9g00884 696 Pfam B3 DNA binding domain 105 206 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00884 Phco-Chr9 6868721 6871748 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco9g00884 B3 1.1e-22 CL0405