Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00877 ATGGCTATGGCCGTGGCTCAACACAGGGAGAGTAGCAGCAGTGGGAGCTTTGACAAGCACCTAGATGCTGGCAAGTATGTGAGGTACACTGCTGAGCAGGTCGAGGCTCTTGAAAGGGTCTATGCGGAGTGCCCTAAGCCTAGTTCTCTTAGGAGACAACAATTGATCAGAGAGTGCCCCATTCTCTCCAACATCGAGCCTAAGCAAATCAAGGTTTGGTTCCAGAACCGAAGGTGTAGGGAGAAGCAGAGAAAAGAGGCTTCTCGGCTTCAGACTGTGAACCGCAAACTCACTGCAATGAACAAGTTGTTGATGGAGGAGAATGATCGGTTGCAGAAGCAGGTGTCACAGCTGGTGTGTGAGAATGGGTATATGAGGCAGCAGTTACATACTACATCAGCAGCAACTACTGATGCTAGTTGTGATTCGGTGGTTACCACTCCTCAACAAACCATGAGAGATGCTAATAACCCTGCTGGACTCCTATCAATTGCAGAGGAGACCTTGACAGAGTTCCTTTCAAAGGCTACGGGAACTGCTGTAGATTGGGTCCAGATGCCTGGGATGAAGCCTGGTCCGGATTCGGTTGGGATCTTTGCCATTTCACAAAGTTGCAGTGGAGTGGCAGCTCGAGCCTGTGGTCTTGTTAGTTTAGAACCTACGAAGATTGCAGAGATCCTTAAAGATCGTCCATCTTGGTTCCGGGAGTGTCGGAGCCTAGAAGTTTTTACTATGTTTCCCGCCGGAAGTGGAGGAACCATTGAACTTGTCTACACACAGACATATGCCCCAACAACACTGGCTCCTGCCCGGGATTTCTGGACTCTGAGATATACCACAAGTTTGGAAAACGGCAGTCTTGTGGTTTGTGAAAGGTCCCTGTCTGGTTCTGGCTCGGGCCCTAATCCAGCTGCTGCAGCTCAGTTTGTAAGGGCTGAAACACTCCCTAGTGGCTACTTGATTCGACCATGCGAGGGTGGAGGATCAATCATTCACATTGTAGACCACCTAAATCTTGAGGCATGGAGTGTCCCAGAGGTGTTACGGCCACTTTATGAATCATCTAAGGTGGTGGCTCAGAAAATGACAATTGCAGCACTTCGCTATATCAGACAAATAGCTCAGGAAACAAGTGGTGAAGTGGTTTATGGGTTGGGTAGGCAGCCTGCTGTTCTACGAACTTTCAGCCAGAGATTGAGCAGAGGTTTTAATGATGCTGTAAATGGATTCAATGATGATGGATGGTCTGTATTGAACTGTGACGGTGCCGAGGATGTAATTATTGCAATTAATTCAACCAAGAATTTGAGTGGAACTTCTAATCCAGCAAGTTCCCTTACATTCCTCGGGGGAATTCTCTGTGCAAAAGCTTCAATGTTGCTTCAAAATGTCCCCCCTGCAGTTTTGGTTCGTTTTTTGAGGGAGCACCGCTCAGAGTGGGCTGATTTCAATGTTGATGCTTATTCTGCTGCATCACTGAAAGCTGGAACCTATGCCTATCCAGGGATGAGGCCTACAAGATTCACTGGCAGTCAAATAATAATGCCTCTTGGTCATACAATTGAACATGAAGAGATGCTTGAAGTTATTAGGCTTGAAGGCCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTAGGGATATTCATCTCTTACAGATATGTAGTGGAATTGATGAAAATGCCGTGGGGGCTTGTTCTGAGCTCGTATTTGCTCCAATTGATGAAATGTTCCCTGATGATGCTCCTTTAGTTCCTTCTGGCTTCCGCATAATTCCATTAGATTCAAAACCAGGTGACAAAAAGGATATAGTTGCTACAAATAGGACCTTGGATTTGACTTCAGGTTTTGAAGTGGGCCCTGCAACAACTGCTGGTGCAGATGCATCATCAAGTCAGAACACTCGATCAGTGTTGACAATTGCCTTCCAGTTCCCTTTTGACAGCAGTTTGCAAGATAATGTTGCAGTCATGGCACGACAATATGTCCGCAGCGTGATTTCCTCGGTGCAGAGGGTTGCCATGGCTATATCTCCGTCAGGTATAAACCCAGCAGCTGGAGCAAAACTTTCTCCTGGTTCTCCAGAGGCTGTTACGCTGGCTCACTGGATCTGCCAAAGTTATAGTTACTATTTAAGGTCTGATTTACTGAGATCAGATTCTCTTGTTGGTGACATGATGCTGAAACATCTGTGGCATCATCAGGATGCTATTCTATGCTGTTCACTGAAGTCATTACCAGTGTTCATATTTGCAAATCAAGCAGGCCTTGACATGTTGGAAACAACTCTAGTGGCCTTACAAGACATCACATTGGATAAAATATTTGATGAGTCTGGACGTAAGGCATTGTGTACAGACTTTGCCAAGTTAATGGAGCAGGGTTTTGCATATCTGCCAGCTGGAATCTGCATGTCGACGATGGGGCGGCATGTTTCATATGATCAAGCCATTGCATGGAAAGTGCTCACCGGAGAAGACAACACTGTTCACTGCTTGGCTTTCTCTTTCATAAATTGGTCGTTTGTATGA 2529 0.4611 MAMAVAQHRESSSSGSFDKHLDAGKYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSQLVCENGYMRQQLHTTSAATTDASCDSVVTTPQQTMRDANNPAGLLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPTKIAEILKDRPSWFRECRSLEVFTMFPAGSGGTIELVYTQTYAPTTLAPARDFWTLRYTTSLENGSLVVCERSLSGSGSGPNPAAAAQFVRAETLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNDAVNGFNDDGWSVLNCDGAEDVIIAINSTKNLSGTSNPASSLTFLGGILCAKASMLLQNVPPAVLVRFLREHRSEWADFNVDAYSAASLKAGTYAYPGMRPTRFTGSQIIMPLGHTIEHEEMLEVIRLEGHSLAQEDAFVSRDIHLLQICSGIDENAVGACSELVFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDIVATNRTLDLTSGFEVGPATTAGADASSSQNTRSVLTIAFQFPFDSSLQDNVAVMARQYVRSVISSVQRVAMAISPSGINPAAGAKLSPGSPEAVTLAHWICQSYSYYLRSDLLRSDSLVGDMMLKHLWHHQDAILCCSLKSLPVFIFANQAGLDMLETTLVALQDITLDKIFDESGRKALCTDFAKLMEQGFAYLPAGICMSTMGRHVSYDQAIAWKVLTGEDNTVHCLAFSFINWSFV 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00877 842 Gene3D - 198 380 IPR023393 -
Phco9g00877 842 SUPERFAMILY Bet v1-like 163 375 - -
Phco9g00877 842 SUPERFAMILY Homeodomain-like 25 87 IPR009057 -
Phco9g00877 842 CDD START_ArGLABRA2_like 158 374 - -
Phco9g00877 842 Pfam Homeodomain 25 83 IPR001356 GO:0003677
Phco9g00877 842 Gene3D - 18 91 - -
Phco9g00877 842 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 21 842 IPR044830 GO:0003700
Phco9g00877 842 Pfam MEKHLA domain 698 841 IPR013978 -
Phco9g00877 842 SMART START_1 163 373 IPR002913 GO:0008289
Phco9g00877 842 SMART HOX_1 22 88 IPR001356 GO:0003677
Phco9g00877 842 Coils Coil 94 121 - -
Phco9g00877 842 CDD homeodomain 25 85 IPR001356 GO:0003677
Phco9g00877 842 CDD bZIP 77 116 - -
Phco9g00877 842 Pfam START domain 164 371 IPR002913 GO:0008289
Phco9g00877 842 ProSiteProfiles 'Homeobox' domain profile. 20 84 IPR001356 GO:0003677
Phco9g00877 842 ProSiteProfiles START domain profile. 154 382 IPR002913 GO:0008289
Phco9g00877 842 FunFam Homeobox-leucine zipper protein REVOLUTA 25 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00877 Phco-Chr9 6824675 6830163 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Phco9g00877 START 4.8e-48 CL0209
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00877 9 6824675 6830163 Phco9g00877 9 6824675 6830163 ECH