Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00865 ATGACACAAGACTGGAGGGGACCTGCATCAAGAGCTACTTCTTTAGGTTCACAAGTGACGAATGAAGTCATTGATTGTTGTGTAGCTGTAATTCGAGAACAGGCAGTTATCGGAGCGAAGACAGTGCAGTGTGTAATGGCGGAACCTGTCACCAACATCCAACTCTCTCCCTCTAAAACCCTAGGCTCAATCAACGGTCATGATTCTATTGTGGAACCGAATCAAACGCTTTCCCAAGATGCTCAACTCAATCAAGAAAACGACGTCGTCGTTCCGACCGGGAAACGGAATAGGGAAGACAACGACGGCGAGGAAAGTTCGCTTCATCCCCTGTGGAAGACCAGCCTCTGCTCCTTCTACAGGAGCCACAACAACTCATGCAACCACGGCGACACGTGCCGCTACGCGCATGGCGAGGAGGAACTCCGCCCTCGCCCCGATAACACGTGGGACCCGACCTCCGAGCGCGCGAAGAAGGCATTGAAGACCGAGACGGGCGAAAAGTGCGCCGTATCGGAGGACGTGATGATGACGGAGGCTGTTGTCGACGATGATGATTGCGGTTCCAATCACGCGCTTAGCAAATGCTTGGTGCATTTGCCGCGGAAGTGGAGTTCCGAGAATTTGAGGAATTTTCTCAACGAACAGGGTATAGCTTTTAAGCATGCTAAGAAAAAGAAAGGTATGATGATTGGTTTTGTTACTTTTGAAGATGAAGAACAATTGAAGAGTTCATCAAAGGATTTAGAGGGAAAAACAATTGGCAACAAAACGGTAAAGGTTGCTGATGTCATTCCTCGGTCATTTGAAAAGAAAAGTAACTCCAGTGTTGCTTCCCATCAAGAATTGGATGAGGGGGTTGATGTTCCTTCGAGTGGAGCTTTGGATGCTGAAACAAATAATGATAAGTTGGCTGTTGATGGTTCTGTGTCCAAGACAAGAAATTTGCGTGATGTAGTGACTCCTCTGGCTCACATTCCCTATGCTGATCAGTTGGAGCAGAAAAAAACCTCTCTCATGCAGATTCTCAAAAAGCTTACTAGAAATGCTCGCAAAGCTTGTCCAAATGGCGTTTCTCTTCCTGAGTGGATTCTCAAGTCCCGGGAAATAGCTGGTCTTCCGTGCAAATTAGAAGGTATTATTGCATCTCCAATTGTAAATGGATACCGTAACAAGTGCGAATTCTCTGTTGGATATTCTCTGGAAGGCAATGTGACTGTAGGTTTCATGATGGGAAACTTCAGGGAAGGTGTAACAGCAGTTGAGGAAGCAATCGAATGCCCAAATGTTTCAAATATTGCTTGCAAATATGCTACAATCTTTCAGGAATTTCTGCAGCACAGTGACTTACCAGTTTGGAACCGATTTAAAAATACTGGATTTTGGCGTCAATTGACGGTCCGAGAAGGGAGAACAAGTGGGAATACTGATCATGCTGTAACTTTTGGTGGCATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAACTTTGATGATGCATTAGTAGCTGCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTGCTGGAGCTACTTCACATTGTCCAACATTACCCCTCACGGCTCTGATTGTTCAGGATCACCAAGGAATATCCAATGTGGCACCCGCTGATGCACCACTGCATTTGCTTACACTTCCTAAAGCAGGTGGGGATCCTGAGATTGGTGAAAACAATAATGCCATGGATGTAAGAATCCATGATTATATCAACAATCTCCAGTTCTCTATATCTCCAACCGCATTTTTCCAGGTTAACACTCTTGCTGCTGAGAAGTTGTACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACACTACTTTTTGATATATGCTGTGGGACAGGAACAATTGGCCTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAATGCTTCTGCAGTATCTGATGCCCATAGGAATGCTGAGATTAATGGCATAAAAAACATTAGGTTTATATGTTCAAAGGCAGAGGACGTGATGGGATCTCTGTTAAGGGAATACCTCAATATGACTAAGAAACAAGATGATTCTAACACCCCTAAAAGTGGCAATGACATTCCTGAGGATAATGCCTGCCCAGAGGCTGAAAATGGTGAAATGGCATCTCATTGTCCAGAAAATACCAATGCAGAAGTTGGAAGTGAGGTTCAGAAGGATAGCACTTCCGAACAAGTTGATGGGATATCTGAACGGGCAGAGAACGTGACAGGATCTCAGTTAAGGGATGATGTAAATGTGCCTATGGAACAAAGTGATGATCCAAATGTCTGTGGAAGTGGCAATGGCATTCCTGGGGATAGTACCTGCCCAGGGCCTGAAACCAGTGAAATGACTTTTCTTTCAGAAAATAACAATGCAGAAGTTGTAAGTGAGGTTCAGAAGGGTAATTCTTCTGAAAATGGGAACACTTCCATGCAACAGTTCAAAAATATTGTTGCCATTGTTGATCCTCCACGTGCTGGACTTCATCCAACTGTGATCAAAGCTTTGAGAACTCATCCACGCTTGCGGAGGCTTGTTTACATATCCTGCAATCCTGAAAGTCTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCTCCCCTAAAAATTGAGAAAGGTAATAAAGACAATAGAGGATGGAGAAACATGAGCAGTGCTGGTTTAGCACGGCACAGGGCCAAGTCTATGCCCATCTCAGAGGCCTTCCATCCCGTAAAGGCCATGGCTGTTGATCTTTTTCCACATACTCCACACTGTGAATTGGTTATGCTTCTTGAGAGGTAG 2808 0.448 MTQDWRGPASRATSLGSQVTNEVIDCCVAVIREQAVIGAKTVQCVMAEPVTNIQLSPSKTLGSINGHDSIVEPNQTLSQDAQLNQENDVVVPTGKRNREDNDGEESSLHPLWKTSLCSFYRSHNNSCNHGDTCRYAHGEEELRPRPDNTWDPTSERAKKALKTETGEKCAVSEDVMMTEAVVDDDDCGSNHALSKCLVHLPRKWSSENLRNFLNEQGIAFKHAKKKKGMMIGFVTFEDEEQLKSSSKDLEGKTIGNKTVKVADVIPRSFEKKSNSSVASHQELDEGVDVPSSGALDAETNNDKLAVDGSVSKTRNLRDVVTPLAHIPYADQLEQKKTSLMQILKKLTRNARKACPNGVSLPEWILKSREIAGLPCKLEGIIASPIVNGYRNKCEFSVGYSLEGNVTVGFMMGNFREGVTAVEEAIECPNVSNIACKYATIFQEFLQHSDLPVWNRFKNTGFWRQLTVREGRTSGNTDHAVTFGGIAEVMLIVQVSTANFDDALVAAEFKRLAQAFVAGATSHCPTLPLTALIVQDHQGISNVAPADAPLHLLTLPKAGGDPEIGENNNAMDVRIHDYINNLQFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNIRFICSKAEDVMGSLLREYLNMTKKQDDSNTPKSGNDIPEDNACPEAENGEMASHCPENTNAEVGSEVQKDSTSEQVDGISERAENVTGSQLRDDVNVPMEQSDDPNVCGSGNGIPGDSTCPGPETSEMTFLSENNNAEVVSEVQKGNSSENGNTSMQQFKNIVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPLKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFHPVKAMAVDLFPHTPHCELVMLLER 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00865 935 MobiDBLite consensus disorder prediction 271 300 - -
Phco9g00865 935 MobiDBLite consensus disorder prediction 716 759 - -
Phco9g00865 935 Gene3D - 390 589 - -
Phco9g00865 935 Gene3D - 103 145 - -
Phco9g00865 935 MobiDBLite consensus disorder prediction 686 789 - -
Phco9g00865 935 SMART c3hfinal6 111 139 IPR000571 GO:0046872
Phco9g00865 935 SUPERFAMILY RNA-binding domain, RBD 199 271 IPR035979 GO:0003676
Phco9g00865 935 CDD AdoMet_MTases 619 673 - -
Phco9g00865 935 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 112 139 IPR000571 GO:0046872
Phco9g00865 935 SUPERFAMILY CCCH zinc finger 109 144 IPR036855 GO:0046872
Phco9g00865 935 Gene3D Vaccinia Virus protein VP39 590 688 IPR029063 -
Phco9g00865 935 Pfam Methyltransferase domain 617 675 IPR025714 -
Phco9g00865 935 Gene3D - 196 265 IPR012677 -
Phco9g00865 935 ProSiteProfiles Zinc finger C3H1-type profile. 111 140 IPR000571 GO:0046872
Phco9g00865 935 Pfam tRNA (Uracil-5-)-methyltransferase 819 870 IPR010280 GO:0006396|GO:0008173
Phco9g00865 935 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 322 935 IPR029063 -
Phco9g00865 935 ProSitePatterns RNA methyltransferase trmA family signature 1. 830 862 IPR030390 -
Phco9g00865 935 Gene3D Vaccinia Virus protein VP39 793 935 IPR029063 -
Phco9g00865 935 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 129 935 IPR045850 -
Phco9g00865 935 Coils Coil 329 349 - -
Phco9g00865 935 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 319 935 IPR010280 GO:0006396|GO:0008173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Phco9g00865 tRNA_U5-meth_tr 1.1e-07 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00865 9 6703844 6710533 Phco9g00865 9 6703844 6710533 ECH