Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00862 ATGTTCGAAAAGATTCTTTCTTTTGCCTGTGTGATGGGGTGCTGTAGTTGTTTTGGGTTCATCAGGACACCTAACCGTCAAAGACAAAGGCCTAAGCCTGCCATTAACTATAATCTCTGCCAGGAGCCTCTGTTGGATGTTGATGACGACATTGAAGATGAAGAGGGCGAGGATTTGTATAACGATGAGGTTAGTAACACTAGTGGAGATGATGCCGAGGAAGAAACTCGTCCCAAGCGATCAGAAGACATTTTGAACCTGAGGGTAGAGAATGGCATGGTTTGTAGGCAGTATCCTGTTAAAGATACTCACAAAGTTGTTCGCATGGAGGATGAAAATGGGAACAAGATGATAAATGAGTATGTTCGTGAGTATAAGATTGGTTCTGGTAGCTATGGAAAAGTGGCTCTTTATCGAAGCTCTGTCGATGGAAAGCATTATGCAATCAAGGCCTTTCATAAATCTCATTTACTGAAGCTTCGAGTTGCACCCTCAGAAACTGCCATGACTGATGTACTACGAGAGGTTTTCATTATGAAAATGGTGGAACATCCTAATATTGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATAACTTCTACATGGTACTTGAATACGTAGAAGGCAAATGGGTTTGTGAGGGTTCAGGTCCCGCATGTGGCTTAGGTGAAGAGACTGCTAGGAGATACTTGCGTGATATTGTTTCTGGATTAACATATCTTCATGCTCATAACATAGTACACGGGGATATTAAACCGGATAATCTGTTGATTACTCATAATGGTACTGTGAAGATAGGAGATTTCAGTGTCAGCCAGGCTGTTGAGGATAATAAGGATGAGCTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAGTGTATTTTAGGTCTGACCTATGGTGGTAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCTTTTCTTGGAGACACACTTCAAGATACATACGACAAAATAGTCAATAATCCTTTGGTACTCCCCAATGATTTGAATCCGCCATTGAAGAACTTGATAGAAGGCTTACTTTCAAAAGACCCAAGACTAAGGATGACTTTGGGTGATGTTGCGGAAGATAGTTGGATTATTGGAGATGATGGGCCAATTCCCGAGTACCTTTGTTGGTGCAAAAGGAAGAGCTTGGGAATTGAAGACCATGATGAGAACAAGACCAACTAA 1239 0.4221 MFEKILSFACVMGCCSCFGFIRTPNRQRQRPKPAINYNLCQEPLLDVDDDIEDEEGEDLYNDEVSNTSGDDAEEETRPKRSEDILNLRVENGMVCRQYPVKDTHKVVRMEDENGNKMINEYVREYKIGSGSYGKVALYRSSVDGKHYAIKAFHKSHLLKLRVAPSETAMTDVLREVFIMKMVEHPNIVNLIEVIDDPESDNFYMVLEYVEGKWVCEGSGPACGLGEETARRYLRDIVSGLTYLHAHNIVHGDIKPDNLLITHNGTVKIGDFSVSQAVEDNKDELRRSPGTPVFTAPECILGLTYGGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNNPLVLPNDLNPPLKNLIEGLLSKDPRLRMTLGDVAEDSWIIGDDGPIPEYLCWCKRKSLGIEDHDENKTN 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00862 412 MobiDBLite consensus disorder prediction 58 80 - -
Phco9g00862 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 248 260 IPR008271 GO:0004672|GO:0006468
Phco9g00862 412 Gene3D Phosphorylase Kinase; domain 1 115 217 - -
Phco9g00862 412 ProSiteProfiles Protein kinase domain profile. 121 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00862 412 SUPERFAMILY Protein kinase-like (PK-like) 110 393 IPR011009 -
Phco9g00862 412 CDD STKc_LKB1_CaMKK 127 382 - -
Phco9g00862 412 FunFam Serine/threonine-protein kinase GRIK2 111 412 - -
Phco9g00862 412 FunFam Serine/threonine-protein kinase Ssp1 115 217 - -
Phco9g00862 412 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Phco9g00862 412 Pfam Protein kinase domain 121 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00862 412 Gene3D Transferase(Phosphotransferase) domain 1 220 388 - -
Phco9g00862 412 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 73 384 - -
Phco9g00862 412 SMART serkin_6 121 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00862 Phco-Chr9 6674394 6679295 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Phco9g00862 Pkinase 8.8e-57 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00862 9 6674394 6679295 Phco9g00862 9 6674394 6679295 ECH