Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00857 ATGGCTTCCTCCAACACTCCCAAATCTCCTAAAGCCAAGAAAGGAGAAATCTCCACAACCCAATGTAAAACGAAGAAGAAGAATCGAGACATCGCGAAAGAGGAGAACCAAAAGAAGAAGAATAAGAAGCCCAAGCTCAGCAACGGCAATTCAAAACAGCCACACGAAAAGGGCGCAGAAGGAAGTGGTGAAGATGTGAAAACGAACGTGTTTCCAATGAATCGTATCAGGACCATGATCAAGGGTGAAGGTCCTGATATGCGTGTTTCGCAGGAAGCCGTGTTAACCATCAACAAAGCTGTGGAGAAGTTCCTTGAGCAATTTACGCAGGACGCATATGCTTGTTGTGTTCAGGACCGCAAGAAATGCCTGAGTTACAAGCACGTTGCAAATGTTGTTAGTAAGAAGATGAGATACGACTTTCTTTCCGATTTTGTTCCTGAGAAAGTGAAAGCTGAGGATGCATTAAGAGAGAGAAATGCAGCAGGCAATGGAGTTTCCATATATTACCCTCCCTCCATCATCCCCACATCAAACTCTCACTTCAAGGACCACTCTTTCCTTTCTCACCACCAAAAGATGGTGATCATGAAGAATCCACTCTTCTCTCTTACCTTTCCACTTCTTCTAATACTACTCTTTTCCCATTCCACCATCTCTTTAGCCCAGTCACCCGCCGCCGCACCAACCGCCCCCGCCACTGCCACCACGGCCATCACTCCGGCTCCGGTACCCTCCTCACCCCCCACAGACATCATCAGAATCCTCAAAAAGGCTGGAGGGTTCACAACCCTAATCCGTCTCCTTCAAGCCACACAAGTTTCCAACCAAATCAACTCTCAACTCCTTACCTCAAACGGTGGCTTAACCTTATTTGCACCCAACGACAATGCCTTTTCAAGCCTCAAACCTGGCTTCCTCAACTCCCTCAACGACCAACAAAAGAACGAGCTCATCCAATTCCACTTGCTACCCACATTCGTTTCCGTTTCAAACTTTGACACTCTCAGCAACCCTGTGAGAACACAGGCCGGTGAAAACCCTGATAGGTTGGCACTGAACATAACAAGCTCAGGAGGGAACCAAGTTAACATGACAACGGGGATTGTTAACGTTACATTAGGTGGCACTGTTTACACTGATCACCAGCTTGCGGTTTACCAAGTGGACAAGGTGCTTCTTCCTCGGGATTTCTTTGTTGCTAAGCCTCCTGCTCCAGCTCCAGCGCCAGAAAAGTCTAAGGGGTCTAAGAAGAAATCTGCAGACAGCACGGAAACTCCTGCAGATGATGCTGAATCTGCTGCTATCAGTGTGAAACAGCAGCATGGGATATGGGCTGCTGTTGCTGCTGCACTTTTAGTTGCAGCATTTTCGTGGTGA 1380 0.4754 MASSNTPKSPKAKKGEISTTQCKTKKKNRDIAKEENQKKKNKKPKLSNGNSKQPHEKGAEGSGEDVKTNVFPMNRIRTMIKGEGPDMRVSQEAVLTINKAVEKFLEQFTQDAYACCVQDRKKCLSYKHVANVVSKKMRYDFLSDFVPEKVKAEDALRERNAAGNGVSIYYPPSIIPTSNSHFKDHSFLSHHQKMVIMKNPLFSLTFPLLLILLFSHSTISLAQSPAAAPTAPATATTAITPAPVPSSPPTDIIRILKKAGGFTTLIRLLQATQVSNQINSQLLTSNGGLTLFAPNDNAFSSLKPGFLNSLNDQQKNELIQFHLLPTFVSVSNFDTLSNPVRTQAGENPDRLALNITSSGGNQVNMTTGIVNVTLGGTVYTDHQLAVYQVDKVLLPRDFFVAKPPAPAPAPEKSKGSKKKSADSTETPADDAESAAISVKQQHGIWAAVAAALLVAAFSW 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00857 459 SUPERFAMILY FAS1 domain 231 396 IPR036378 -
Phco9g00857 459 MobiDBLite consensus disorder prediction 18 42 - -
Phco9g00857 459 MobiDBLite consensus disorder prediction 1 17 - -
Phco9g00857 459 Pfam Fasciclin domain 261 395 IPR000782 -
Phco9g00857 459 ProSiteProfiles FAS1/BIgH3 domain profile. 249 393 IPR000782 -
Phco9g00857 459 Gene3D FAS1 domain 249 395 IPR036378 -
Phco9g00857 459 MobiDBLite consensus disorder prediction 412 426 - -
Phco9g00857 459 SUPERFAMILY Histone-fold 49 142 IPR009072 GO:0046982
Phco9g00857 459 FunFam Fasciclin-like arabinogalactan protein 11 227 395 - -
Phco9g00857 459 Gene3D Histone, subunit A 18 148 IPR009072 GO:0046982
Phco9g00857 459 MobiDBLite consensus disorder prediction 1 70 - -
Phco9g00857 459 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 206 447 IPR045003 -
Phco9g00857 459 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 71 133 IPR003958 -
Phco9g00857 459 MobiDBLite consensus disorder prediction 404 434 - -
Phco9g00857 459 Coils Coil 22 42 - -
Phco9g00857 459 SMART fasc_3 290 396 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00857 Phco-Chr9 6634322 6640682 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Phco9g00857 Fasciclin 3.2e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00857 9 6634322 6640682 Phco9g00857 9 6634322 6640682 ECH