Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00838 ATGATGTCTGAAGAATCCTTTTCTGTTCCTCCCAACACCGTCAGAGACTCCTTGGTTCATGTTCAACCCCCAAGCTCAAACCCTAATAATAATCCTAACCCTAGTTCAAATCCAGCTAAGAGAAGGAGAAGTCTACCCGGAACACCAGATCCAGATGCAGAAGTGGTAGTTCTGTCACCTAAGTCCCTCATGGCCACCAACCGTTTCATGTGTGAAATTTGCAAAAAGGGTTTTCAGAGAGACCAGAATTTGCAGCTGCATAGACGTGGACACAACCTTCCGTGGAAGCTGAAGCAGAGAACAAACAAAGATCAACTGAGGAAGAAGGTGTATGTGTGCCCTGAGAAGAGTTGTGTGCATCACGACCCCTCTAGAGCCTTGGGAGATTTGACAGGCATAAAGAAGCACTATAGCCGAAAACATGGGGAGAAGAAGTGGAAGTGTGACAAGTGCTCCAAGAAATATGCTGTTCAATCCGATTGGAAGGCCCATAGCAAGATTTGTGGGACTAGAGAGTACAAATGTGACTGTGGCACACTTTTCTCCAGGAAGGACAGCTTCATAACGCATAGAGCCTTTTGTGACGCTTTGGCCGAAGAAAGTGTGAGGTTAACAACAGTTCCAGCAGCTTTAAGCAACTTGAGAAAAGATCATCATTCGACAAATGCTCAAGGTTCGAGGATCCCTCAGATTTTTTCAGGATTTCACTCAGATCAATTAGGTGGTTCAGGAACATTAGAACCGTTGGTGAATTATGCTGACGCAGACCATCATCATCACCAACAACAACAGCAAAAGCTAAGGCTACCACTCTGGCTAGACCACCAGGCCAATGCACAAGTATTTCACCACCCCCTTGTTAACTTCCCAACCAAAACTAGTGCTTTCACTTCTTCGGGGCCAAACCCTGTGCTTGATGTGGTGCAAACGATGGACATGTTTGGGCCACAGTTTGTGAATTACCGTTGCCCAGAAGCGTCATTTGGAGGTTCCAACCTGTCTGTGCTGCCGCCACATGGACTGAAGCAAGAACAAGAAGAAAACAAAGGAGACTTGTCGCTTAGCGCAGGCTCTAACTTGTACTTGAGTAGTAATCAGAACCCACCTCACTACATGTCAGCCACCACGCTGTTGCAGAAAACTGTTCAAATGGGATCTATGAGGGTGAACGACAACACGTTTCGCTCCATAGGCAGCAATAGAAACAGCAACCATAACAATGTTGTCAACAACGTGGTTGTTGAGGTTCAGAAGCTGGACGAGTTGGTGACTGTGGAAGGGTGCACCAACCTTGGAGGTGGTGGTGGGTATTTATTAAATGATGACTCGAACAACTCGTTTGTGGTTGTGAATGGCACCAAGGGTTTGGAGCACATGGTGATGCCGGTGGATAAAGAGACAACAGCATCAATTAGGGGAAAGCAATTACACTCCATAAGCTCACACAACAAAAATCAACTTGGTTTAACCCGAGATTTTTTGGGTGTCGGAGATAATAACATTGAATCAATAAGGAGACCTTTTTTTCAGCAAGATCTTGTTGAATTTAATGCAATGGGGTCAGCCTCAGCCATGAACCTGCAGAGCCAGTATGGTGGACACTATGTCTAG 1611 0.4575 MMSEESFSVPPNTVRDSLVHVQPPSSNPNNNPNPSSNPAKRRRSLPGTPDPDAEVVVLSPKSLMATNRFMCEICKKGFQRDQNLQLHRRGHNLPWKLKQRTNKDQLRKKVYVCPEKSCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRKDSFITHRAFCDALAEESVRLTTVPAALSNLRKDHHSTNAQGSRIPQIFSGFHSDQLGGSGTLEPLVNYADADHHHHQQQQQKLRLPLWLDHQANAQVFHHPLVNFPTKTSAFTSSGPNPVLDVVQTMDMFGPQFVNYRCPEASFGGSNLSVLPPHGLKQEQEENKGDLSLSAGSNLYLSSNQNPPHYMSATTLLQKTVQMGSMRVNDNTFRSIGSNRNSNHNNVVNNVVVEVQKLDELVTVEGCTNLGGGGGYLLNDDSNNSFVVVNGTKGLEHMVMPVDKETTASIRGKQLHSISSHNKNQLGLTRDFLGVGDNNIESIRRPFFQQDLVEFNAMGSASAMNLQSQYGGHYV 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00838 536 MobiDBLite consensus disorder prediction 1 42 - -
Phco9g00838 536 MobiDBLite consensus disorder prediction 1 54 - -
Phco9g00838 536 FunFam protein indeterminate-domain 12-like 48 117 - -
Phco9g00838 536 SMART c2h2final6 69 91 IPR013087 -
Phco9g00838 536 SMART c2h2final6 111 141 IPR013087 -
Phco9g00838 536 SMART c2h2final6 146 166 IPR013087 -
Phco9g00838 536 Gene3D Classic Zinc Finger 124 202 - -
Phco9g00838 536 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Phco9g00838 536 Gene3D Classic Zinc Finger 47 122 - -
Phco9g00838 536 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 510 IPR031140 -
Phco9g00838 536 FunFam protein indeterminate-domain 5, chloroplastic-like 124 203 - -
Phco9g00838 536 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Phco9g00838 536 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00838 Phco-Chr9 6531143 6533146 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco9g00838 None None None