Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00833 ATGGAATTTGATCTGAACCATGAAGTGACTGAGGTTGAGAAAAATGCATTCTGTGATAGGGAATGTGAGAAAGATGCTGGTGTTAGTTGCTGGTCCTCTTCCACTTCTTCATCTTCTAGTTCCTCTTCAGCTCGTGTGTCCTCTTCTTACCTTGAGCTTTGGCATGCTTGTGCCGGCCCCCTCACTTCTCTTCCCAAGAAAGGAAATGTAGTGGTCTATTTTCCACAAGGTCACTTAGAACAGGTTGCCTCTTTCTCTCCTTTCACACCAATGGAGATTCCCCCTTACGATCTTCAGCCACAGATCTTTTGCAGGGTTGTCAATGTCCAGCTACTTGCCAACAAGGAGAATGATGAGGTTTATACACAGGTTACTTTGCTTCCTCAGGCCGAGTTGGAAGGGATGAATTCAGAGGGCAAAGAACTTGAGGAATTTGGAGCAGAAGAGGAGGGAGATGAAAGATCACCAACTAAATCAACCCCTCACATGTTTTGCAAAACACTAACTGCCTCGGATACCAGCACACATGGGGGCTTTTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAACAGCAGAGGCCTTCACAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAGTTTCGTCACATTTACCGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGAGATGCAGTACTCTTTCTAAGGGGTGAAAATGGTGAATTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGATCTTCCTGAATCAGTTATTGGTAGCCAGAACTGCTACCCCAATGTCCTTTCTTCCGTGGCAAATGCAGTATCCACCAAAAGCAAGTTTCATGTTTTCTACAGTCCAAGGGCAAGTCATGCAGACTTTGTTGTTCCATATCAAAAATATGTCAAAAGCATCAAGAATCCACTGAGCACTGGGACAAGATTCAAAATGAGACTTGAAATGGATGAATCTCAAGAAAGAAGGTGTAACAGTGGCACGTTGATTGCAACTAGTGATTTGGATCCTTACAGATGGCCAAAATCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAGGATTTTGAGAGTAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCCCCCTTGAGCATTCAGTCTTCCCCAAGACTGAAGAAACTGCGGACAGGTCTACAGGTTGCCTCACCTAGTCACCACATCACTGCAGCACGAGGCAGTGGGTTGGTGGGCTATGATGAGTCTGTAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATACTGGTTTTGTGTCACTCTACTATGGATGTGACACAGTAACCAAGCCACTAGGTTTTGAGATGAGCACTCCGAGTCATCCAAATCTTGGATCAGCTGAAGTAAGAAAGGTTACCTCTTCTGAGCTTAGTAGTGTTCACCCTTTCAGTTATGCAGGCTTTGTGGAAACAAACAGGTTTCCGAGGGTCTTGCAAGGTCAAGAAATATGTCCATTGAAATCCCTGACAGGAAAGGTTGATCTGAACCTTGGTGCTTGGGGAATGCCCAATCTGGGTTTCAACCTCCACCAGGCAACCAAACCCAACTTTCGACCTACATTGTTCCCTTATGGGGACATTCACCAAGCTGGTCAAACTAGTTTGTTTTGCTCAAAATCCACCGCTTTCCAGAGAGAGAATGTTCCATTTAATAAACCATCCACTCAGGCAGGAATCATTGTAAATGAAGTTGGACGACCAGAACTCCCAAATGAGCATAAGCTGCAGGACAATCTTTCTGCTGCTGCTGCTGCTGCTTCGTTAGGGGCTGCAAATATGGGGGTTCCTAATGACAATAATGTCCAGGGAAAAGTAAATGCCTGCAAACTATTTGGGTTTTCTTTGTCTGGGGAAACCACTGCCCAAAACTTACAGAACTCTGCTAAAAGGAGCTGCACAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCTATTGATCTTTCAAGACTGAGCAGCTACAATGATCTGCTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGCCTCCTAAAAGATCCTGACAAGGGATGGAGGATCCTCTACACTGATAGTGAGAATGACATAATGGTTGTGGGGGATGACCCATGGCATGAGTTTTGTGATGTGGTGTGCAAGATCCATATATATACCCAAGAAGAGGTGGAAAAGATGACAATTGGGATGATCAGTGATGACACTCATAGCTGTTTGGAAGAGGCACCAATCATTACGGAGGCTTCAAAGTCTTCCTCTGTGGGTCAGCCAGATTATTCTCCAACAGCAGTTAGAGTCTAA 2388 0.451 MEFDLNHEVTEVEKNAFCDRECEKDAGVSCWSSSTSSSSSSSSARVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFTPMEIPPYDLQPQIFCRVVNVQLLANKENDEVYTQVTLLPQAELEGMNSEGKELEEFGAEEEGDERSPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAVRPRNDLPESVIGSQNCYPNVLSSVANAVSTKSKFHVFYSPRASHADFVVPYQKYVKSIKNPLSTGTRFKMRLEMDESQERRCNSGTLIATSDLDPYRWPKSKWRCLMVRWDEDFESNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVASPSHHITAARGSGLVGYDESVRSPKVLQGQENTGFVSLYYGCDTVTKPLGFEMSTPSHPNLGSAEVRKVTSSELSSVHPFSYAGFVETNRFPRVLQGQEICPLKSLTGKVDLNLGAWGMPNLGFNLHQATKPNFRPTLFPYGDIHQAGQTSLFCSKSTAFQRENVPFNKPSTQAGIIVNEVGRPELPNEHKLQDNLSAAAAAASLGAANMGVPNDNNVQGKVNACKLFGFSLSGETTAQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLSSYNDLLSELERLFGMEGLLKDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVCKIHIYTQEEVEKMTIGMISDDTHSCLEEAPIITEASKSSSVGQPDYSPTAVRV 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00833 795 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Phco9g00833 795 SUPERFAMILY DNA-binding pseudobarrel domain 156 275 IPR015300 -
Phco9g00833 795 CDD B3_DNA 162 264 IPR003340 GO:0003677
Phco9g00833 795 FunFam Auxin response factor 162 266 - -
Phco9g00833 795 Gene3D - 328 398 - -
Phco9g00833 795 FunFam Auxin response factor 662 756 - -
Phco9g00833 795 SUPERFAMILY CAD & PB1 domains 670 746 - -
Phco9g00833 795 Gene3D - 162 266 IPR015300 -
Phco9g00833 795 ProSiteProfiles PB1 domain profile. 667 749 IPR000270 GO:0005515
Phco9g00833 795 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco9g00833 795 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Phco9g00833 795 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 756 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco9g00833 795 SMART B3_2 164 266 IPR003340 GO:0003677
Phco9g00833 795 FunFam Auxin response factor 327 400 - -
Phco9g00833 795 Gene3D - 663 756 - -
Phco9g00833 795 Pfam AUX/IAA family 658 751 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00833 Phco-Chr9 6459672 6464978 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco9g00833 AUX_IAA 4.4e-07 CL0072