Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g00829 | ATGGATTTGGTTCCCAGCGTTAAGGAAAAATTGAACTATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTGCACCTTTCAAAGCAGGGGAAGAAGCAGGATCTTGTTGATCGAATATTATCGGTTCTCTCAGATGAACAAGTTTCAAAAATGTGGGCTAAGAAGAATGCTGGTGGAAAAGAACAGGTGGCAAAATTAGTTGATGATACATATAGGAAAATGAAGATATCTGGGGCCACTGATCTAGCATCTAAGGGTCAGGGAGCATCAGATAGCAGTAGTGTAAAGGTGAAAGGTGAAATTGATGATTCCTTCCAACCAGATACAAAGATTCGCTGTTTATGTGGAAGTAGATTGGAAACAGGGGATTTGGTCAAGTGTGATGATCGAAGATGCCAGGTGTGGCAACACATCAGTTGCGTTATTATTCCGGAGAAACCTACAGAAGGCATCCTACCAGTTCCTGATAAGTTTTATTGTGAACTATGTCGGCTCAATCGTGCTGACCCATTTTGGGTTGCAGTGGCACACCCTTTGCTTCCCGTGAAGTTAACAACAACGAGCAATCCAACTGATGGAACCAACCCTGTGCAGAGTGTGGAAAGAACATTTCAACTTACTAGAGCAGACAAGGACTTGGTTTCCAAACCAGAAGTTGATGTTGAGGCTTGGTGTATGCTCCTAAACGACAAGGTTCCATTCAGGATGCAATGGCCACAATATACAGACCTGCAGGTCAATGGTGTTCCTGTTCGAGCAACTAACAGACCTGGTTCCCAGTTGCTTGGAGCTAATGGGCGGGATGATGGCCCAATTATCACGCCATACACAAAAGATGGAATTAATAAGATTTCCTTAACAGGATGTGATGCTCGCATTTTTTGTCTAGGGGTTCGTATTGTTAGAAGGCGTAACATGCAGCAGATCCTAAACTTAATTCCAAAAGAGTCTGATGGTGAGCGATTTGAAGACGCTCTTGCACGTGTGTGTCGTTGTGTTGGGGGTGGAAACACAGATGGTGATGCTGATAGTGACAGTGATTTGGAAGTCGTTTCAGATACTTTCAGTGTCAACCTTCGTTGTCCTATGAGTGGTTCAAGAATGAAGATTGCTGGAAGATTCAACCCTTGTATTCACATGGGTTGCTTTGACCTTGAGGTTTTTGTGGAAATGAATCAACGATCAAGGAAGTGGCAATGTCCTATATGTCTCAAAAACTATGCTTTGGAGAATATTATCATTGATCCTTATTTCAATCGCATCACTTCTATGATGTTAAATTGTGGTGAAGAAATAACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTGAAGACAAAGAGTGAAAGTGAACGCCAGGAATTAGGGAGTCTAGCACAGTGGCATCTTCCTGATGGATCCCCATGCGTTTCAGCTGATGGTGACTTCAAGAGAGTGGATACATTGAAGCAGGTCAAACAGGAAGGTGTTTCTGACAGTCCAACTGGTTTAAAACTTGGCATCAGGAAGAATTGCAATGGAGTTTGGGAAGTCAGTAAACCTGAGGGCACAAACACCTCTTCTGGTAATAAATTGAAAGGGGTTTTTGGAAATCCTGAACAGGTTGTTATTCCAATGAGCAGCAGTGCTACTGGAAGTGGCCGAGATGGTGACGATCCTAGTGTAAATCAGGGTGGTGGTGGGAATATCGACTATTCTGCTGCAACTGGCATTGAAATAGATTCTCTGTCTCTCAATAATGTTGATTTAGCATATGAATATACTGCACATGACACTTCTGCTCAGGCGGGTGGTCAAGAAGTTATTGTTCTTAGTGATTCTGAAGAAGACAATGATCTTTTGGTATCGCCTCCGATTGTGTATAGGAACAACCAAAATGATGCTACAGATGGTTATTCTGTACAACCACCTGTAATAGTTGATTCATATACTGAAGATCATAATCTTGTTGGTGGAAATTCATGCTTAGGACTCTTTCCCAATGATGATGATGATTTTGGGATGCCTTCCCTGTGGTCTATGCCTTCTGGAAGTCAGGCTGGTCCTGGATTCCAACTATTTGGTTCCGATGCAGATGTGTCAGATGCATTGGTCCATCTGCAACATGGTCCTGTGAATTGCTCTTCATCACTAAATGGTTATGCACTAGCTCCTGATACTGCTTTGGGATCTGGTGGTATCTTGCATGATTCCTCTGCTGGTCGGTTGGATGCTGATTTGAATGGTGGTTTGGTGGACAATCCATTAGCATTTGGTGGTGATGATCCCTCACTTCAGATTTTTCTCCCCACTAGACCAGCTGACTCATCCATTCAGAATGAATTGAGAGATCAGGCAAATGTGGCTAATGGTGTCTGCACTGAGGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTGGTAGCAATGGTGATGCTTCTACTCAAAATGGATTGAATTCTAGACATCAAATCCCAACCAGAGATGTTGGCACAAATACTTTGGATGATACTGCTTCTTTACTCCTTGGGATGAATGATGTTAGACCTGACAGGCCAAGTAGGCAAAGGTCAGATAGTCCTTTCTCATTTCCTCGCCAAAGACGTTCTGTAAGACCCCGCTTGTACCTTTCTATTGATTCGGATTCAGAGTAA | 2646 | 0.4312 | MDLVPSVKEKLNYFRIKELKDVLTQLHLSKQGKKQDLVDRILSVLSDEQVSKMWAKKNAGGKEQVAKLVDDTYRKMKISGATDLASKGQGASDSSSVKVKGEIDDSFQPDTKIRCLCGSRLETGDLVKCDDRRCQVWQHISCVIIPEKPTEGILPVPDKFYCELCRLNRADPFWVAVAHPLLPVKLTTTSNPTDGTNPVQSVERTFQLTRADKDLVSKPEVDVEAWCMLLNDKVPFRMQWPQYTDLQVNGVPVRATNRPGSQLLGANGRDDGPIITPYTKDGINKISLTGCDARIFCLGVRIVRRRNMQQILNLIPKESDGERFEDALARVCRCVGGGNTDGDADSDSDLEVVSDTFSVNLRCPMSGSRMKIAGRFNPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITSMMLNCGEEITEVEVKPDGSWRVKTKSESERQELGSLAQWHLPDGSPCVSADGDFKRVDTLKQVKQEGVSDSPTGLKLGIRKNCNGVWEVSKPEGTNTSSGNKLKGVFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGNIDYSAATGIEIDSLSLNNVDLAYEYTAHDTSAQAGGQEVIVLSDSEEDNDLLVSPPIVYRNNQNDATDGYSVQPPVIVDSYTEDHNLVGGNSCLGLFPNDDDDFGMPSLWSMPSGSQAGPGFQLFGSDADVSDALVHLQHGPVNCSSSLNGYALAPDTALGSGGILHDSSAGRLDADLNGGLVDNPLAFGGDDPSLQIFLPTRPADSSIQNELRDQANVANGVCTEEDWISLSLGGGAGGSNGDASTQNGLNSRHQIPTRDVGTNTLDDTASLLLGMNDVRPDRPSRQRSDSPFSFPRQRRSVRPRLYLSIDSDSE | 881 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g00829 | 881 | SUPERFAMILY | SAP domain | 1 | 59 | IPR036361 | - | |
| Phco9g00829 | 881 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 337 | 447 | IPR013083 | - | |
| Phco9g00829 | 881 | Pfam | SAP domain | 12 | 42 | IPR003034 | - | |
| Phco9g00829 | 881 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 103 | 171 | IPR013083 | - | |
| Phco9g00829 | 881 | PANTHER | ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN | 9 | 662 | - | - | |
| Phco9g00829 | 881 | CDD | PHD_Bye1p_SIZ1_like | 114 | 165 | - | - | |
| Phco9g00829 | 881 | SMART | PHD_3 | 114 | 166 | IPR001965 | - | |
| Phco9g00829 | 881 | Gene3D | SAP domain | 3 | 58 | IPR036361 | - | |
| Phco9g00829 | 881 | CDD | SP-RING_Siz-like | 360 | 409 | IPR031141 | - | |
| Phco9g00829 | 881 | MobiDBLite | consensus disorder prediction | 805 | 837 | - | - | |
| Phco9g00829 | 881 | Pfam | PHD-finger | 114 | 166 | IPR019787 | - | |
| Phco9g00829 | 881 | ProSitePatterns | Zinc finger PHD-type signature. | 115 | 165 | IPR019786 | - | |
| Phco9g00829 | 881 | ProSiteProfiles | Zinc finger SP-RING-type profile. | 346 | 429 | IPR004181 | GO:0008270 | |
| Phco9g00829 | 881 | MobiDBLite | consensus disorder prediction | 800 | 881 | - | - | |
| Phco9g00829 | 881 | FunFam | E3 SUMO-protein ligase SIZ1 | 1 | 66 | - | - | |
| Phco9g00829 | 881 | MobiDBLite | consensus disorder prediction | 541 | 564 | - | - | |
| Phco9g00829 | 881 | Pfam | MIZ/SP-RING zinc finger | 359 | 407 | IPR004181 | GO:0008270 | |
| Phco9g00829 | 881 | SUPERFAMILY | FYVE/PHD zinc finger | 107 | 169 | IPR011011 | - | |
| Phco9g00829 | 881 | ProSiteProfiles | SAP motif profile. | 11 | 45 | IPR003034 | - | |
| Phco9g00829 | 881 | SMART | sap_9 | 11 | 45 | IPR003034 | - |
Transcription factors information