Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00818 ATGGAGAGCAGTGACACATACACCCCTGCTTCCTCTGCCCCACTTTCTCACTCCCCCACTTCCTCTTCTTCCTCACCACCACCTCCCACAATTGTGATGACCCCTTGTGCTGCATGCAAGATTTTGAGGAGAAGATGTGCTGAGAAATGTGTTCTGGCACCTTATTTTCCTCCCACTGAACCTGCCAAGTTCACTATTGCTCACCGTGTCTTTGGTGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTTTATGAGGCTAGTGCAAGAATAAGAGACCCTGTTTATGGTTGTGCAGGAGCAATTTGCCAGCTCCAGAAGCAAGTGAATGAACTTCAAGCACAATTGGCAAAGTCACAAGCTGAGCTTGTAACCATGCAACTTCAGCAAGCCAATCTTGTGGCTCTAATTTGCATGGAGATGGCACAGAGTCCACAGGAATCACCACAACAATCAGTGGACAATTTCATTTCAACTCCTCCTCACAGTGGTGGCTATCAAAGTGGCATGAACCTCTTTGAGGAGAACACTAGCCCAAACTCACTATGGGAGCCCCTTTGGACTTGA 603 0.4826 MESSDTYTPASSAPLSHSPTSSSSSPPPPTIVMTPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQSPQESPQQSVDNFISTPPHSGGYQSGMNLFEENTSPNSLWEPLWT 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00818 200 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 161 - -
Phco9g00818 200 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Phco9g00818 200 MobiDBLite consensus disorder prediction 1 20 - -
Phco9g00818 200 MobiDBLite consensus disorder prediction 1 28 - -
Phco9g00818 200 Coils Coil 114 141 - -
Phco9g00818 200 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00818 Phco-Chr9 6292715 6294168 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Phco9g00818 LOB 2.5e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco9g00818 9 6292715 6294168 Phco9g00818 9 6292715 6294168 ECH
Phco10g01550 10 38281954 38283580 Phco9g00818 9 6292715 6294168 PCT