Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00806 ATGGGTCCTTTAGGAAGTGGAACAGTAGAACAAGTTGAGCAACGCGCAAGAGATAGAGATAGAGAGCCAAAAGCCGAAAACGCCATCATCCAAACAGCCCCTTCTCTCTCTTTTAAAAGACACCCTGTGGTTTTTCTCTGCCCTCTTAACTTTTTGCCCTCTCTCTCTCTCCTCTTATCGATTTCACAGACAATCTCCTCCTCACAGTTTCGTCTTCTCGATCTCACTTGTTTGTGGTTTATGCCTGTTTTCCTCCAGGCAATCATGAGTGACAAAGGAGAAAGAACATGTCCTCTCTGTGCTGAAGAAATGGATTTGACAGATCAGCAGTTGAAGCCTTGCAAATGTGGTTATGAGATCTGTGTCTGGTGCTGGCATCACATAATGGACATGGCTGAGAAGGATGACACTGACGGGCGATGCCCCGCATGTCGTTCTCCTTATGATAAGGAAAAGATTGTTGGGATGGCTGCAAACTGTGAGAGATTGGTGAATGAAGTTAATATGGAGAAAAAGATGAAGACTCAGAAGTCGAAGTCTAAATCGTCTGATGGGCGCAAGCAGCTCAGCAGTGTGCGAGTGATTCAGAGGAACCTTGTTTACATAGTTGGGTTGCCTCTCAATCTTGCAGATGAAGATCTTCTTCAGCGGCGAGAGTATTTTGGTCAGTATGGGAAGGTCTTAAAAGTGTCAATGTCTAGAACAGCAGCTGGTGTCATCCAACAGTTTCCAAATGATACATGCAGTGTATATATAACTTATTCAAAGGAAGAGGAAGCAATTCGTTGTATTCAAAATGTACATGGATTTGTTTTGGAGGGTAGACCTTTAAGGGCTTGTTTTGGAACCACAAAATATTGTCATGCATGGCTCCGAAGTGTGCCTTGCAGCAATCCGGATTGTTTATATTTGCATGAGATTGGCTCTCAAGAAGATAGCTTTACTAAAGATGAAATAATTTCAGCATACACCAGAAGTCGAGTTCAACAGATCACTGGTGCAACTAACAATATGCAACGGCGGTTAGGGAATGTATTACCTCCTCCACTGGATGACAATATGAACACTACTTCTCCAAAGCCTATTGTGAAAAATCCTTCAAGTAACTCTGTTAGCACTGTTAGAGGTTCACCTCCAAATGGAATCTATGAGAGACATGTTCCCCTTCCTGCTAGTGCTGCATGGGGTACTCAGGCCACAAATTGTCAGCCCCCAGCTGGAGGTCTATCTTATCCAAATGGGCCATCCAAGCCCAAGCCTGATACAGGCAGCAGCTCGCTAGCATTTTCTGCAGCTGTTACAGGCTCAATTCAGGCTTCTGATGTTACAAAGAGACCACCATCAAGTGATGGCAGTCATAGTATGACAACTAGAGTGAAAAATGAATTGTTGAAACCTGTTAGACAATACAACAATAGTGCAGACGGCCTGGTTAGTGCAGGAGAAAAATCTTCATCTTCTGATGTGTCTCCTGTTCCTGTGAATTTGAACAGCCAGTTATCTTCTCTACCATTGTCCCGAGATAGTAATGGCAATTGTACCACAGCAAACACAATAAATTCTACCAACATGACTGGACAGTCTTGTAACTCTGGTCCTGAGGAAGCAATGCCTGCTACCAATGAAGAGATTCCAAATTTGTCCATTGAGTTGTCCTCAATTAACATTGATGGAAATGCTGAACATTGCAGTATAACCAAACCTAATAGCCCGCATACTGATTATGTCTTGATTAAATCTCCTGAAATTCAAGGATCACAATATAATGACAGATTTAGGGATGTAATAACTACAAATGTGGCTGGTATAGCTACACCAGATAATGAGGTTTGTAATTCTAGGGAACAGTGTGATTGGAAATTGGATTCTCAATCTCTAGTAGTATCAGACGCTGTGGAATTTGATGATGATGTAACATCTTTTGATAATCAAAGACTTAAGGATCCAGAAGTTGTTTGTCGTTCTTATTTGCCAAAGTCAACTGGTTTCCTTCATGTATCAAACCTCTCTAGCCCTTGTCTTCTGCAGCATGGTGAAGGTTGTACTCCCGTGAATGCAGGTTCTGTATCAGTTGATGAATCTATATTACATGCATCTAATATATTATGCAATGACCACCCGGAGAAATTGGTCAGCAGCAGCTCGTATGGTCTGCTTAATGACGAAAGAAATGGACATAGCATTCAAAGATTAGTTGAAGCAGTAAATGCTGGACATGATGTTACTATGGATAAGGGTGAAAGTAGTATAATTTCTAATATTTTGTCCATGGATTTTGATGCCTGGGATGATTCACTAACATCACCACATAATTTAGCTAAGTTGTTGGGTGACAATACTGATAACCAGTCTGGTCCTTTAAACATATCTAGTTCTTGGAAAGTTCACAGTAACAATCAATCAAGATTCTCTTTTGCAAGGCAGGAGGAATCCAAAATCCAAATGTTTGATTCACATACATCTTATGGTGTAAACCATCAACGGCCAAATAATAAAGTATTCCAGAATTTTTCTGAAAGAGACTTGTATATGGATAAGTCGGGCATTGCGAATGGATTTCGAACTAGTAACTTTGAGGAAGCTGAAAATATGGCTAGTGGTCATTTCATTTCATCTAATAAGCTTTCGGCCATTTCAAGAGCACAAGTTTCAGCCCCACCGGGATTTTCCATTCCAAGCAGGCCACCACCACCTGGGTTTTCGTCCAATGAGAGAGTGGAACAGGGTTTTGACTCCATTTCTGGGAATTCTCTACTTGACCATTCTTCCCTTCTGAGAAATTCATATCAGTCACCTTCAGCTGGAAACCTTGGTGGTGCTGGGGATATTGAATACATGGACCCTGCTATTTTGGCAGTTGGCAAAGGGAGACTTCAAGGTGCACTGAACAGCCCTGCACTGGACATTCGATCAAATTTTATGCCACAGTTAAATTACTTTGAAAATGATGCCAGACTACAATTATTGATGCAAAGATCTCTGTCACCACAGCAAAACCATAGATTTTCTGAAATTGGGAATACTTTTTCTCAACTTGGTGATTCGTATGCTGTTTCTTCAAGGTTAGATCAGTCACAAGTCAGTAATCTGGGTCCATTCCAACAGCTGTCTATGCAGCAGTCTGCAAATGCAGTCTTGTCAAATGGGCAATGGGATGGGTGGAATGAGGTGCAGAGTGGAAATGGTTTGGGTGTGGCCGAGCTTTTGAGAAATGAAAGACTTGGGTTCAATAAATTTTATTCAGGATATGATGATTCAAAATTTAGGATGCCAAATTCTGGGGATCTCTACAACAGAACATTTGGGATGTGA 3312 0.4143 MGPLGSGTVEQVEQRARDRDREPKAENAIIQTAPSLSFKRHPVVFLCPLNFLPSLSLLLSISQTISSSQFRLLDLTCLWFMPVFLQAIMSDKGERTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTDGRCPACRSPYDKEKIVGMAANCERLVNEVNMEKKMKTQKSKSKSSDGRKQLSSVRVIQRNLVYIVGLPLNLADEDLLQRREYFGQYGKVLKVSMSRTAAGVIQQFPNDTCSVYITYSKEEEAIRCIQNVHGFVLEGRPLRACFGTTKYCHAWLRSVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTRSRVQQITGATNNMQRRLGNVLPPPLDDNMNTTSPKPIVKNPSSNSVSTVRGSPPNGIYERHVPLPASAAWGTQATNCQPPAGGLSYPNGPSKPKPDTGSSSLAFSAAVTGSIQASDVTKRPPSSDGSHSMTTRVKNELLKPVRQYNNSADGLVSAGEKSSSSDVSPVPVNLNSQLSSLPLSRDSNGNCTTANTINSTNMTGQSCNSGPEEAMPATNEEIPNLSIELSSINIDGNAEHCSITKPNSPHTDYVLIKSPEIQGSQYNDRFRDVITTNVAGIATPDNEVCNSREQCDWKLDSQSLVVSDAVEFDDDVTSFDNQRLKDPEVVCRSYLPKSTGFLHVSNLSSPCLLQHGEGCTPVNAGSVSVDESILHASNILCNDHPEKLVSSSSYGLLNDERNGHSIQRLVEAVNAGHDVTMDKGESSIISNILSMDFDAWDDSLTSPHNLAKLLGDNTDNQSGPLNISSSWKVHSNNQSRFSFARQEESKIQMFDSHTSYGVNHQRPNNKVFQNFSERDLYMDKSGIANGFRTSNFEEAENMASGHFISSNKLSAISRAQVSAPPGFSIPSRPPPPGFSSNERVEQGFDSISGNSLLDHSSLLRNSYQSPSAGNLGGAGDIEYMDPAILAVGKGRLQGALNSPALDIRSNFMPQLNYFENDARLQLLMQRSLSPQQNHRFSEIGNTFSQLGDSYAVSSRLDQSQVSNLGPFQQLSMQQSANAVLSNGQWDGWNEVQSGNGLGVAELLRNERLGFNKFYSGYDDSKFRMPNSGDLYNRTFGM 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00806 1103 MobiDBLite consensus disorder prediction 417 459 - -
Phco9g00806 1103 MobiDBLite consensus disorder prediction 886 907 - -
Phco9g00806 1103 SMART rrm1_1 199 280 IPR000504 GO:0003723
Phco9g00806 1103 CDD RRM_CNOT4 193 292 IPR034261 -
Phco9g00806 1103 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 199 280 - -
Phco9g00806 1103 Pfam RING/Ubox like zinc-binding domain 97 149 - -
Phco9g00806 1103 ProSiteProfiles Zinc finger RING-type profile. 97 145 IPR001841 -
Phco9g00806 1103 MobiDBLite consensus disorder prediction 1 24 - -
Phco9g00806 1103 MobiDBLite consensus disorder prediction 350 377 - -
Phco9g00806 1103 SUPERFAMILY RING/U-box 89 154 - -
Phco9g00806 1103 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 89 1097 IPR039780 GO:0004842|GO:0030014
Phco9g00806 1103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 165 IPR013083 -
Phco9g00806 1103 FunFam RNA binding (RRM/RBD/RNP motifs) family protein 89 165 - -
Phco9g00806 1103 SUPERFAMILY RNA-binding domain, RBD 192 278 IPR035979 GO:0003676
Phco9g00806 1103 MobiDBLite consensus disorder prediction 340 385 - -
Phco9g00806 1103 CDD mRING-HC-C4C4_CNOT4 96 146 IPR039515 -
Phco9g00806 1103 Gene3D - 199 280 IPR012677 -
Phco9g00806 1103 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 198 284 IPR000504 GO:0003723
Phco9g00806 1103 MobiDBLite consensus disorder prediction 397 467 - -
Phco9g00806 1103 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 200 278 IPR000504 GO:0003723
Phco9g00806 1103 SMART rrm2_1 199 280 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00806 Phco-Chr9 6147489 6154629 Dispersed