Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00796 ATGAACAATAATGTTGGGAAAGGGAAAAGAGGTTTGGCAGAACACAATCATATGATTTTTGACAAAAAGAGTCTCAATTGTGGAGTAGCCAATGGAGGGGTTTCACAGCAACCACCTCAAGGGCCAGTCATATGCTGGGAGAGATTTCTTCCTGTGAGATCGATAAAAGTTTTGTTGGTGGAAGATGATGATTCAACACGCCATGTTGTGCGTGCTCTGTTACGCAATTGTAATTACGAAGTTACTGCTGTTTCCAATGGTCTTCAAGCATGGAAAGTCCTAGAAGATCCAGAAAATTGCATTGGTCTTGTCTTAACAGAGGTAGCTATGCCTATTTTGTCTGGAATAGGTCTTTTGTGCAAGATCATGAACCACAAAACTCTGAAGAATATCCCTGTGATTATGATGTCGTCTCACGATTCTATGGGTATTGTCTTTAAGTGTTTGTCAAAAGGCGCTGTTGATTTTTTAGTGAAACCTATTCGGAGGAATGAACTTAAGAATCTTTGGCAGCATGTCTGGAGAAGATGCCACAGTTCTAGTGGGAGTGGGAGTGAAAGTGCGACCTACACCAGAAAATCTGCAAAGTCAAGAAGTAATGATGCTTCTGAAAACAATGGTGACAGCAATGACGAGAATGACTATGGAAGCAAAGGCTTGAGCATTCGAGATGGAAGTGATAATGGAAGTGGCACTCAGAGTTCATGGACTAAATGTCTGGCTCAAGTTGGCAGTCCACGTCCAGTTTCACCTCATAAACAATTGGTTGATGCCCCAGATAGCACTTGTGCCCAGGTGATGCAAACAAAGACTGAAAAAGTTAGTAGTAGATGGGTACATGCAACAGAAAAAGAGTGCCTTGAACTTATTGATCATCTTGATGATGTTGCAATGGGCAAGGACTTGGCTGTGGGAATATCTTTGAATATGCAACTAGATCATCGACTTGAGGAACTTTCTAGCCATCCAATGGGTAAAGGGGCAAATAAAATGTCTGATGTTGATGATATGCAGATAGTTAAAGGACAGAGTAATGCCTGTGAAAATGGGCAACTGGAATACAATGGTGGTAAAACCAGGACACAGGAAAATCAAACTGTGAATGTTATCGATTTTACTGATAGCAATAGTCCACAGGCTGAAAGCAGAGACTTGAACACTCCAAATGGGTTTTCTGGTTTCTCACTAACAAAAGAAAACTGTTGCCCCAAAGAGCATCCATCCCTGGAACTAACTTTGAAAAGGCTTGGAGAAGTAAGAGATGCTAAAAATGTCACGGGTGAAGAATGCAATGTGTTGAGGCATTCAGACCAGTCAGCATTCTCAAAATATAATACTGCTTCTTCTGCTAACCAGGCTCAAACCGGAAATGTAGGAAGCTGTTCTCCACTAGCCAATGGCTCAGCTGCAGCGAATGCAGAGGTAATACACAACTTTCCATCTCACTCAAATGTCACTCCTCCAAACCAACAATCTAATGGGAGCAACAACATCAATGACATGGCCTCCACTAATACATATCTTGGGACCAAACGTTGTACTTTTGACAAGATGCCAGATTCTGTAAGAGGGATGGGCTCATTTAATTCCTCTGAACTCCAAACTTTACCGAACAATGGTATCTCTTCATCTCAGAAGAAAACTTTTGCCCGGGAAGAATATATGGAAATTGTTAGAGGACAAATGGGAGGCTCTGAACATGAATTCCAAGTCGAGCACACTCATTATGAGCTTCACCATTATAATCACATTTCCCATAAAGCTACTGTAGATCTCCAATCAGATCATGATCTCTTACTCAAAAGCTCGCCCAACACTGTTCAGCAATGTGTATCATCAAATGCATTTGGAGGGCCAGCAGAAAGTAATACTGCAAACTACACAGTAGATGGAAATGCTGTGGAGAGTGATCATGGGAGCAATGGACAGGACGGAACCTTGACACTGAGGACAGTAAATGTGGAAAATGGCAATGTGGCTGTTGGGAGCATTGGAGTTGGTGGCATTGATAGGAAAAACATTGGAAATGTGGCAGATGAAGGACGACTTGCATTGAGAGAAGCTGCTTTGACCAAATTTCGTCAAAAGAGAAAAGAAAGATGCTTTGAGAAAAGGGTTCGATATCATAGCAGGAAACAACTAGCAGAACAGCGGCCTCGTATTAGGGGACAATTTGTTAGACGAATAGTGTCTGATGCCAAAGAAGAAAAAGATCACCAAAGTGACAACCTGGTACCTGGGGATAATAGCGACATCCTTCAATAA 2265 0.4185 MNNNVGKGKRGLAEHNHMIFDKKSLNCGVANGGVSQQPPQGPVICWERFLPVRSIKVLLVEDDDSTRHVVRALLRNCNYEVTAVSNGLQAWKVLEDPENCIGLVLTEVAMPILSGIGLLCKIMNHKTLKNIPVIMMSSHDSMGIVFKCLSKGAVDFLVKPIRRNELKNLWQHVWRRCHSSSGSGSESATYTRKSAKSRSNDASENNGDSNDENDYGSKGLSIRDGSDNGSGTQSSWTKCLAQVGSPRPVSPHKQLVDAPDSTCAQVMQTKTEKVSSRWVHATEKECLELIDHLDDVAMGKDLAVGISLNMQLDHRLEELSSHPMGKGANKMSDVDDMQIVKGQSNACENGQLEYNGGKTRTQENQTVNVIDFTDSNSPQAESRDLNTPNGFSGFSLTKENCCPKEHPSLELTLKRLGEVRDAKNVTGEECNVLRHSDQSAFSKYNTASSANQAQTGNVGSCSPLANGSAAANAEVIHNFPSHSNVTPPNQQSNGSNNINDMASTNTYLGTKRCTFDKMPDSVRGMGSFNSSELQTLPNNGISSSQKKTFAREEYMEIVRGQMGGSEHEFQVEHTHYELHHYNHISHKATVDLQSDHDLLLKSSPNTVQQCVSSNAFGGPAESNTANYTVDGNAVESDHGSNGQDGTLTLRTVNVENGNVAVGSIGVGGIDRKNIGNVADEGRLALREAALTKFRQKRKERCFEKRVRYHSRKQLAEQRPRIRGQFVRRIVSDAKEEKDHQSDNLVPGDNSDILQ 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00796 754 Pfam CCT motif 686 727 IPR010402 GO:0005515
Phco9g00796 754 CDD psREC_PRR 57 160 - -
Phco9g00796 754 FunFam Two-component response regulator-like PRR37 55 213 - -
Phco9g00796 754 SMART REC_2 55 170 IPR001789 GO:0000160
Phco9g00796 754 Pfam Response regulator receiver domain 57 168 IPR001789 GO:0000160
Phco9g00796 754 SUPERFAMILY CheY-like 53 179 IPR011006 -
Phco9g00796 754 ProSiteProfiles Response regulatory domain profile. 56 174 IPR001789 GO:0000160
Phco9g00796 754 MobiDBLite consensus disorder prediction 178 235 - -
Phco9g00796 754 MobiDBLite consensus disorder prediction 732 754 - -
Phco9g00796 754 ProSiteProfiles CCT domain profile. 686 728 IPR010402 GO:0005515
Phco9g00796 754 PANTHER TWO-COMPONENT RESPONSE REGULATOR 56 340 IPR045279 GO:0009736
Phco9g00796 754 MobiDBLite consensus disorder prediction 178 216 - -
Phco9g00796 754 Gene3D - 54 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00796 Phco-Chr9 6020502 6050306 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Phco9g00796 Response_reg 2.8e-21 CL0304