Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00792 ATGCAGAAATTTATTATTCATAGAGTGAGAAGAATGGAGGCATTTCCCAGGGACCAACGTGGCTCGCTCGAAGTGTTCAACCCTTCGTCGTCTTCATACTCCAACGAGAAGCCGGTAAACTCGCCATTACGCACTCAATCCACGTGGAAGACGTGGGTTGACTCACGCGTCGAAGAGCCACCGGAGCAGCAGCAACGTGGCGGCGGTCCCGATGAGGTCACGGCCACGTCGTGGATGGCGCTGAAGGATTCCACTCCGCCGCCGCCATCACAGACACTCGCCGCGGTGCTCGGCGAGCCTCCGGCGGAGGTCGGACATGCCGCGAAGCGCGCCGCGGAATGGGGCCTGGTGCTGAAGACGGACACGGAAACCGGGAAGCCGCAGGGAGTGGCGGTTCGGACCTCCGGCGGGGAGGAGCCGGGCGTGAAGGTGACCGGTGGGTCGAGGAGGGACTCCGGCAACTCCGTCCGAAGCTCCGGCGAGTCCTCCGACGACGGGAGGGAGTACCGGGGAGGAATCCCGAGGGTTTCGGAGGACCTGAGGGACGCTTTGTCCGCGTTTCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATACTGTACGCCAGTGCCGGGTTTTTCAAGATGACGGGTTATACGTCGAAGGAGGTGATAGGGAGAAACTGCCGGTTTTTGCAGGGAGCAGACACGGATCCGGATGATGTGGCAAAGATAAGGGAGGCCTTACAAAGTGGGCACACCTACTGTGGAAGGTTACTCAATTACAAGAAGGACGGAACACCCTTTTGGAACCTTCTCACTATTGCCCCTATCAAGGACCACGATGGCAGAGTCCTTAAATTTATAGGAATGCAAGTGGAAGTTAGCAAGCATACAGAGGGAACCAAGGAGAACGTGCTACGTCCCAATGGATTACCCGAATCCTTAATTCGATACGATGCTCGTCAGAAAGAGAAGGCAAATAGTTCAGTATCTGAGTTGTTGCTGGCTGTGAGGAGGCCACGGGCACTGAGTGAATCGGGAGGCCGTCCCTTGATCAGAAAGTCAGCATCCGGTGATGATGATCAAGATAAACCAGAGAAGTCATCCAGGAGAAAATCTGAGAGTGTGGCTTCTTTTAGACGTAAATCACATGCAGGAGACAGAACTTCAATGGAGAGAATCACTGAGCTACCTGAAAAGAAACACAAAACATCTCGTCGCCGTTCCTTCATGGGGTTCATCAGGAAAAATCAATCCAAGTTCGGAAGCTTCGATGACGAAGCTGTTATTGAGGATAGCTCTGAGAGTAGTGATGAGGATGGTGAGAGGTCTGGTAATTTCGATGGAAAAGTACAGAGAAAGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATCGAGAAGAACTTTGTCATTACTGATCCCAGGCTACCTGATAACCCCATTATCTTTGCATCTGATAGCTTCTTGGAGCTTACGGAGTATAGTCGTGAAGAAATATTGGGAAGAAACTGCAGGTTTCTGCAAGGGCCTGAAACTGATCCAGCAACAGTGAGAAAAATTAGAGAGGCCATTGACAGTCAAACTGACGTCACTGTGCAACTCATTAATTATACAAAGAGTGGTAAAAAGTTCTGGAACTTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAGGTGCAGTACTTTATTGGAGTTCAACTTGATGGTAGTCAACACGTGGAGCCTCTTCACAACCGCATTGCAGAAAATACGGCAAAAGAGGGAGAACAATTGGTAAAAGACACTGCTGAAAATGTCGATGATGCACTGAGAGAACTTCCTGATGCTAATTTGAAACCAGAAGATTTATGGATGAATCATTCAAAAGTGGTTCACCCCAAACCACATAGGAGGGATGAAGCTGCTTGGAAAGCTATTCAGAAGATCCTAGAAGGTGGAGAGCAGATAGGCTTGAATCATTTTAGGCCAGTTAAACCTTTGGGATCAGGAGATACCGGCAGTGTCTATCTGGTGGAGCTAGGTGAAACTGGCCAATATTTTGCCATGAAGGCTATGGAGAAGGGCATTATGCTCAATCGTAACAAGGTGCATAGAGCTTGCACGGAGAGAGAGATCCTTGACATGTTGGACCACCCTTTTCTTCCTGCATTATATGCTTCCTTCCAGACCAAAACACATGTTTGTTTGATAACCGATTATTGTTCTGGTGGAGAACTATTCCTTCTTCTTGACCGACAGCCAGCTAAGGTTCTCAGGGAAGATGCAGTGAGATTTTATGCGGCTGAAGTAGTTGTTGCATTGGAGTATCTTCATTGTCAAGGGATAATATATCGGGATTTGAAGCCAGAAAATGTGTTACTACAAAGCAGTGGACACGTCTCCCTAACAGATTTTGATTTGTCATGTTTGACATCTTGCAAACCACAGCTTCTAGTTCCAACTATAAATGAAAAGAAGAAAGCACAGAAAGGCCACCAACCTCCAATATTCATGGCAGAACCAATGAGAGCATCAAACTCTTTTGTGGGCACAGAAGAGTACATAGCTCCGGAAATTATAACGGGTTCAGGCCATTCTAGTGCTGTGGATTGGTGGGCTCTTGGAATTCTTCTATATGAAATGTTTTATGGATATACACCATTCAGGGGAAAGACCAGGCAAAGAACATTTACAAATATTCTTCACAAGGACCTTAAATTTCCCAAAAGTAAACAGGTAAGTTTCAGTGCAAAGCAGTTAATGTACCGGTTGCTGAACAGAGACCCCAAAAGCAGATTGGGTTCAAGAGAAGGAGCAAATGAAATTAAGAACCATCCATTCTTTCGGGGTGTCAATTGGGCTCTAGTTCGTTGCACGAAGCCTCCTGAGCTTGATGCTCCTCTCTTCGACACAACTCAAGGAGAAAAGGAAGTCAATTTTGAAGATCAAGTGCAAGAGGAGATGAACGTCTTCTGA 2964 0.476 MQKFIIHRVRRMEAFPRDQRGSLEVFNPSSSSYSNEKPVNSPLRTQSTWKTWVDSRVEEPPEQQQRGGGPDEVTATSWMALKDSTPPPPSQTLAAVLGEPPAEVGHAAKRAAEWGLVLKTDTETGKPQGVAVRTSGGEEPGVKVTGGSRRDSGNSVRSSGESSDDGREYRGGIPRVSEDLRDALSAFQQTFVVSDATKPDYPILYASAGFFKMTGYTSKEVIGRNCRFLQGADTDPDDVAKIREALQSGHTYCGRLLNYKKDGTPFWNLLTIAPIKDHDGRVLKFIGMQVEVSKHTEGTKENVLRPNGLPESLIRYDARQKEKANSSVSELLLAVRRPRALSESGGRPLIRKSASGDDDQDKPEKSSRRKSESVASFRRKSHAGDRTSMERITELPEKKHKTSRRRSFMGFIRKNQSKFGSFDDEAVIEDSSESSDEDGERSGNFDGKVQRKEKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDSQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNRIAENTAKEGEQLVKDTAENVDDALRELPDANLKPEDLWMNHSKVVHPKPHRRDEAAWKAIQKILEGGEQIGLNHFRPVKPLGSGDTGSVYLVELGETGQYFAMKAMEKGIMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCSGGELFLLLDRQPAKVLREDAVRFYAAEVVVALEYLHCQGIIYRDLKPENVLLQSSGHVSLTDFDLSCLTSCKPQLLVPTINEKKKAQKGHQPPIFMAEPMRASNSFVGTEEYIAPEIITGSGHSSAVDWWALGILLYEMFYGYTPFRGKTRQRTFTNILHKDLKFPKSKQVSFSAKQLMYRLLNRDPKSRLGSREGANEIKNHPFFRGVNWALVRCTKPPELDAPLFDTTQGEKEVNFEDQVQEEMNVF 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00792 987 CDD STKc_phototropin_like 656 963 - -
Phco9g00792 987 FunFam LOV domain-containing protein 445 609 - -
Phco9g00792 987 Gene3D PAS domain 445 609 - -
Phco9g00792 987 ProSiteProfiles PAS repeat profile. 176 247 IPR000014 -
Phco9g00792 987 NCBIfam PAS domain S-box protein 481 571 IPR000014 -
Phco9g00792 987 NCBIfam PAS domain S-box protein 203 297 IPR000014 -
Phco9g00792 987 SUPERFAMILY PYP-like sensor domain (PAS domain) 197 289 IPR035965 -
Phco9g00792 987 FunFam LOV domain-containing protein 656 740 - -
Phco9g00792 987 SUPERFAMILY PYP-like sensor domain (PAS domain) 472 571 IPR035965 -
Phco9g00792 987 MobiDBLite consensus disorder prediction 23 53 - -
Phco9g00792 987 FunFam Putative LOV domain-containing protein 190 346 - -
Phco9g00792 987 FunFam Putative LOV domain-containing protein 741 956 - -
Phco9g00792 987 ProSitePatterns Serine/Threonine protein kinases active-site signature. 778 790 IPR008271 GO:0004672|GO:0006468
Phco9g00792 987 SMART serkin_6 657 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00792 987 ProSiteProfiles PAC domain profile. 530 584 IPR000700 -
Phco9g00792 987 MobiDBLite consensus disorder prediction 352 401 - -
Phco9g00792 987 ProSiteProfiles PAC domain profile. 250 304 IPR000700 -
Phco9g00792 987 SUPERFAMILY Protein kinase-like (PK-like) 644 964 IPR011009 -
Phco9g00792 987 MobiDBLite consensus disorder prediction 17 95 - -
Phco9g00792 987 MobiDBLite consensus disorder prediction 437 452 - -
Phco9g00792 987 CDD PAS 203 292 IPR000014 -
Phco9g00792 987 Gene3D Transferase(Phosphotransferase) domain 1 741 956 - -
Phco9g00792 987 SMART pas_2 178 247 IPR000014 -
Phco9g00792 987 SMART pas_2 458 527 IPR000014 -
Phco9g00792 987 Pfam PAS domain 479 571 IPR000014 -
Phco9g00792 987 Pfam PAS domain 197 293 IPR000014 -
Phco9g00792 987 ProSiteProfiles PAS repeat profile. 456 529 IPR000014 -
Phco9g00792 987 SMART pac_2 533 575 IPR001610 -
Phco9g00792 987 SMART pac_2 253 295 IPR001610 -
Phco9g00792 987 ProSitePatterns Protein kinases ATP-binding region signature. 663 686 IPR017441 GO:0005524
Phco9g00792 987 MobiDBLite consensus disorder prediction 342 407 - -
Phco9g00792 987 MobiDBLite consensus disorder prediction 119 173 - -
Phco9g00792 987 Gene3D Phosphorylase Kinase; domain 1 656 740 - -
Phco9g00792 987 PANTHER FLIPPASE KINASE 1-RELATED 474 967 - -
Phco9g00792 987 Pfam Protein kinase domain 660 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00792 987 Gene3D PAS domain 190 344 - -
Phco9g00792 987 ProSiteProfiles Protein kinase domain profile. 657 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00792 987 MobiDBLite consensus disorder prediction 423 452 - -
Phco9g00792 987 CDD PAS 471 571 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00792 Phco-Chr9 5983463 5993494 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Phco9g00792 Pkinase 9.6e-65 CL0016