Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00778 ATGTTGGTGAGGCGTTTCTCAGCTAAATCGCCGTTGAATTGTGCTCTTCCTTCAACCGTAATCCGGCACTGCTTCTCAAGCTCCAATGAAAACGATGACGTACAGAAAGTGTTCGGCATACTGAGCAGCACCTCCACGCCGGAGCAGCTGAAACAATCCCTCAAAGCAAGCGGTGTTTTCCTCTCCAATGAATTGATCGATCAAGTTCTCAAGAGGGTTCGCTTCAGCCACGGGAACCCCTCTCAAACTCTTGAGTTTTTCCGTTACACCGGAAGAAGGAAAGGGTTTTACCACACTGCGTTTTCCCTCGATACCATGCTCTATATTCTCGGTAGAAGCCGCATGTTTGGTCACGTTTGGGACCTCTTAATCGAATGCCATCGAAAAGACCAAACGGCCATAACGTCTCGCACCGTTATGGTCGTGTTGGGCAGAATTGCCAAAGTGTGTTCCGTTCGACAAACGGTGGACTCGTTTAGAAAGTTCAAGAAGCTGGTGGCTGAGTTTGATACTAATTGTTTCAATGCTCTGTTGAGAACGCTGTGTCAGGAGAAGAGCATGACGGATGCTAGAAACGTTTACCATAGTTTGAAGCATCGGTTTCGCCCAAATTTACAGACTTTTAACATTCTTCTTTCTGGGTGGAAGACCCCTGAGGATGCTGATGGGTTCTTTAAGGAGATGAAGGAAATGGGAGTGACACCTGATGTTGTTACATACAATAGTTTGGTGGATGTTTACTGCAAGGGGAGGGAAATTGAGAAGGCTTATAAGGTGCTTGATGAAATGCGTGACCGGGATTTGTCGCCGGATGTGATCACGTATACATGTATCATTGGTGGGTTGGGGTTGATCGGGCAGCCTGATAAAGCTAGGGGTGTTTTGAAGGAGATGAAGGAGTATGGGTGTTACCCTGATGCTGCAGCCTACAATGCTGCCATCAGGAATTTCTGCATTGCAAAGAGGCTTGGTGATGCTTATGGTTTGGTGGAGGAGATGGTGAGCAAGGGTTTGTGTCCGAATGCAACTACATACAATTTGTTCTTTCGGGTATTTTACTGGTCCAATGATTTGAATAGCTCTTGGATCATGTACAAGAGGATGATGGTTGAGGGGTGCCTTCCGAATACGCAGTCTTGTATGTTCTTGATAAGGTTGTTTAGGAAGCATGAAAAGGTGGAGATGGCGCTGCAGTTATGGGAGAACATGGTGGAAAAGGGTTTTGGGTCGTATACCTTGGTTTCTGACGTGCTGTTTGACTTGCTTTGTGATATGGGGAAGTTGGGAGAAGCCGAAAAGTGCTTCTTGGAGATGATTGAGAAGGGGCAGAAGCCGAGTAATGTGTCGTTTAGAAGAATTAAGGTTCTCATGGAACTAGCGAATAGACATGAGGCCCTTGAGAGCTTGACGCAGAAAATGTCCATATTTGGGCGACCACTCCAATTGCATCAAAGTTCGGTGAGCCAAACTGAGACACCGGATTCTCTCTTTACTAATAGTTAG 1503 0.4624 MLVRRFSAKSPLNCALPSTVIRHCFSSSNENDDVQKVFGILSSTSTPEQLKQSLKASGVFLSNELIDQVLKRVRFSHGNPSQTLEFFRYTGRRKGFYHTAFSLDTMLYILGRSRMFGHVWDLLIECHRKDQTAITSRTVMVVLGRIAKVCSVRQTVDSFRKFKKLVAEFDTNCFNALLRTLCQEKSMTDARNVYHSLKHRFRPNLQTFNILLSGWKTPEDADGFFKEMKEMGVTPDVVTYNSLVDVYCKGREIEKAYKVLDEMRDRDLSPDVITYTCIIGGLGLIGQPDKARGVLKEMKEYGCYPDAAAYNAAIRNFCIAKRLGDAYGLVEEMVSKGLCPNATTYNLFFRVFYWSNDLNSSWIMYKRMMVEGCLPNTQSCMFLIRLFRKHEKVEMALQLWENMVEKGFGSYTLVSDVLFDLLCDMGKLGEAEKCFLEMIEKGQKPSNVSFRRIKVLMELANRHEALESLTQKMSIFGRPLQLHQSSVSQTETPDSLFTNS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00778 500 Gene3D Tetratricopeptide repeat domain 30 216 IPR011990 GO:0005515
Phco9g00778 500 Gene3D Tetratricopeptide repeat domain 358 492 IPR011990 GO:0005515
Phco9g00778 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Phco9g00778 500 SUPERFAMILY TPR-like 176 475 IPR011990 GO:0005515
Phco9g00778 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Phco9g00778 500 Pfam PPR repeat family 235 282 IPR002885 -
Phco9g00778 500 Pfam PPR repeat family 305 350 IPR002885 -
Phco9g00778 500 SUPERFAMILY HCP-like 288 471 - -
Phco9g00778 500 Pfam PPR repeat 418 442 IPR002885 -
Phco9g00778 500 Pfam PPR repeat 383 408 IPR002885 -
Phco9g00778 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Phco9g00778 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Phco9g00778 500 NCBIfam pentatricopeptide repeat 238 272 IPR002885 -
Phco9g00778 500 NCBIfam pentatricopeptide repeat 273 307 IPR002885 -
Phco9g00778 500 NCBIfam pentatricopeptide repeat 309 342 IPR002885 -
Phco9g00778 500 NCBIfam pentatricopeptide repeat 418 446 IPR002885 -
Phco9g00778 500 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 39 473 - -
Phco9g00778 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Phco9g00778 500 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Phco9g00778 500 Gene3D Tetratricopeptide repeat domain 302 357 IPR011990 GO:0005515
Phco9g00778 500 Gene3D Tetratricopeptide repeat domain 217 301 IPR011990 GO:0005515
Phco9g00778 500 Pfam Pentatricopeptide repeat domain 167 213 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00778 Phco-Chr9 5798348 5799850 Dispersed