Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00754 ATGAGTAAGTGTTTGAAGTTAGGTGAAGGGGCATCAAGAGAGAGGGTGGTGAAGAGTGGTGAGTTTAAGTGCAAGACTTGTAACAAGCAATTTCTTTCCTTTCAAGCCCTTGGAGGCCACAGAGCTAGCCACAAGAAGCTAAAACGCATGGCTTCAAACCTTTCGTGTTCGGTGGTCACACCAAAATTGCACCAATGCTCAATTTGTGGACTTGTATTTGGTATTGGACAAGCTTTGGGAGGACATATGAGAAAGCATAGAGTTTCCTCAAATCATGCATTGCCAATTCATCACCAAGATCTGCCAAAATCTAACCTTCGTTTCTGCTTCGACTTGAACTTGACACCCTACGAGAATCATCTCAACCTCAATTTAAGGACACCCGTTTCACATTTGTTCATGTGA 405 0.4296 MSKCLKLGEGASRERVVKSGEFKCKTCNKQFLSFQALGGHRASHKKLKRMASNLSCSVVTPKLHQCSICGLVFGIGQALGGHMRKHRVSSNHALPIHHQDLPKSNLRFCFDLNLTPYENHLNLNLRTPVSHLFM 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00754 134 SUPERFAMILY beta-beta-alpha zinc fingers 22 86 IPR036236 -
Phco9g00754 134 Gene3D Classic Zinc Finger 19 86 - -
Phco9g00754 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Phco9g00754 134 PANTHER ZINC FINGER PROTEIN ZAT5 16 119 - -
Phco9g00754 134 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Phco9g00754 134 ProSiteProfiles Zinc finger C2H2 type domain profile. 22 49 IPR013087 -
Phco9g00754 134 SMART c2h2final6 64 86 IPR013087 -
Phco9g00754 134 SMART c2h2final6 22 44 IPR013087 -
Phco9g00754 134 Pfam C2H2-type zinc finger 64 87 - -
Phco9g00754 134 Pfam C2H2-type zinc finger 22 46 - -
Phco9g00754 134 ProSitePatterns Zinc finger C2H2 type domain signature. 24 44 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00754 Phco-Chr9 5578531 5578935 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Phco9g00754 zf-C2H2_6 1e-08 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco10g01607 10 38850790 38851320 Phco9g00754 9 5578531 5578935 PCT