Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco9g00747 | ATGTCTGCAGCTCTGGATTTGACTCTCGATGACATAATCAAGAACAGCAAAAAATCTGGATCCGGAAAATTCCGTGGTCAGAACCGATCATCCGGATCCGGACCCGGACCTTCACGCCGCTTCCCCAACCGTGTCGTCAACCGCGCCGCTCCTTATGCCGCCGCCAAGGCGCCCGAGGCGACTTGGAAGCACAATTTATACGCAGATCAGTACGTGGCTGCGTCGGGGTACCCTGCTCAAGGTGGTTTTGCGTCTTCTATAGAAACTGGGACCAAACTTTTCATTTCTAACTTGGATTATGGTGTTTCCAATGATGATATTAAGGAATTGTTTTCTGAAGTTGGTGACATGAAACGGCACAGGGTTCATTACGACAGGAGTGGAAGATCGAAGGGTACAGCAGAAGTAGTATTTTCACGACGAGCTGATGCTGTAGCTGCTATGAAGAGATACAACAATGTTCAATTAGATGGCAAACCAATGAAGATAGAGATTGCGGGAACAAACATTGCTACACCTGGTGTTCCTGCTGCAAACAGAGCTATTGGAAATTTGAATGGAGTTCCTCGAAGTGGACAAGGAAGAAATGGGGCATTAAGAAAGCCAGGAGGAAGAGGGCAAGGCATGCAAAGGGGTCGAGGAAGAGGTCGTGGTGGAGGAAGACACGACGAAAAATTATCTGCAGATAATCTGGATGCTGATCTGGAGAAGTATCATGCAGAGGCAATGCAATTGAACTGA | 741 | 0.4764 | MSAALDLTLDDIIKNSKKSGSGKFRGQNRSSGSGPGPSRRFPNRVVNRAAPYAAAKAPEATWKHNLYADQYVAASGYPAQGGFASSIETGTKLFISNLDYGVSNDDIKELFSEVGDMKRHRVHYDRSGRSKGTAEVVFSRRADAVAAMKRYNNVQLDGKPMKIEIAGTNIATPGVPAANRAIGNLNGVPRSGQGRNGALRKPGGRGQGMQRGRGRGRGGGRHDEKLSADNLDADLEKYHAEAMQLN | 246 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco9g00747 | 246 | Pfam | C-terminal duplication domain of Friend of PRMT1 | 190 | 240 | IPR025715 | - | |
| Phco9g00747 | 246 | CDD | RRM_THOC4 | 91 | 165 | - | - | |
| Phco9g00747 | 246 | SMART | FoP_duplication_2 | 168 | 246 | IPR025715 | - | |
| Phco9g00747 | 246 | PANTHER | RNA AND EXPORT FACTOR BINDING PROTEIN | 5 | 244 | - | - | |
| Phco9g00747 | 246 | MobiDBLite | consensus disorder prediction | 185 | 233 | - | - | |
| Phco9g00747 | 246 | Coils | Coil | 228 | 246 | - | - | |
| Phco9g00747 | 246 | SMART | rrm1_1 | 92 | 164 | IPR000504 | GO:0003723 | |
| Phco9g00747 | 246 | MobiDBLite | consensus disorder prediction | 20 | 37 | - | - | |
| Phco9g00747 | 246 | MobiDBLite | consensus disorder prediction | 16 | 43 | - | - | |
| Phco9g00747 | 246 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 91 | 168 | IPR000504 | GO:0003723 | |
| Phco9g00747 | 246 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 93 | 161 | IPR000504 | GO:0003723 | |
| Phco9g00747 | 246 | FunFam | THO complex subunit 4 | 84 | 228 | - | - | |
| Phco9g00747 | 246 | Gene3D | - | 80 | 229 | IPR012677 | - | |
| Phco9g00747 | 246 | MobiDBLite | consensus disorder prediction | 216 | 233 | - | - | |
| Phco9g00747 | 246 | SUPERFAMILY | RNA-binding domain, RBD | 84 | 197 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco9g00747 | Phco-Chr9 | 5539461 | 5545261 | Wgd |