Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00726 ATGCCTTCTAACGCTCTACACTTCTCAACTCAACCACCCCACCTCACGGCCATGGATGAGTATGAATGTGATGAGCAGGTCCACGTGGCAGTTGGGAAGTCCCTTAAGAAAGACACCACTTTGATTCAATGGTGTTTCACCCATTTCAGCAAAACACATATATGCTTACTTCATGTTTATCGACCTTCTACTATGATCCCCACACTATTAGGAAAATTGCCAGCATCCCAAGCTAGTCCTGAAGTCGTGTCTGCTTATAGAATAGAGGAAAGAGAAGACACCAAGAGGCTTATGGAGAAGTACTTGAGCCTTTGCCGTGCAGCTAAGGTTAAGGTAACTAGTATCATTGGTGAAGCTGATCAAGTTCAGAAAGGGATTGTAGATTTGGTTACTGTGCATAATATCAGGAAGCTTGTTATTGGAGCAATAACCCCAGAAAATTGCATGAAACTCAAAAGGAATTCCAGTAAAGCAAACTTTGCTGTTAAAAATGTTCCTCCATTCTGTGAAATATGGTTTGTCTATAAAGGTAAACACATTTGGACAAGAGAAGCTTCTGAAACTCGTTGTTTCGTGTCTTCCCTTGCTCAACCTGAGACTACAACGGCAGAGAGCTTGAGTTGTAGATCATTTCAATATGGTACAAATGAATTATTCCATTCAGAATGTCTTCAATCAAATTCTACAAGGACTACACGAAGTACAGTTCCCAATGAAATCATTGAAGCAGAAGCCACTTTTTCATCCAAATCATCCAGTTGCAATAGTCATTGTTCTCCCCAACATTCAGCTAGTCGGCATGTAGATACTCATTCAGAGCTTGAGGAAGAGAAAATAGATAGTCAACTTATTGAAGCCAAAGGAGAAGCTAATGCTGCAACAGACAAGGCCCTTGAGGAGCTGTTGAAGTGCAAAAGGTTGGAATTCAAAGCCATTGAGGCCATTAGTAAGGTGAACTTTTTTGAATCTGCCCGTGCACATGAAGTAAAGCTCAGAAAAGAGGTTGCGGATGCAGTGAGAGCTACAATACAGGAGCAACAGATGTTCTTGGAGGAGAAGGAAGAAATTTCTAGAGAACTGGAAATGACCACAAGAAGTATTTCCCTTCTAGGAAATTGTGCACATGAAATCAACAGTAAGCGAGATGAAGCTACAAATGAACTATCACTAATTCAAGCATCCTCCTCAAACCTGCAGCATGAAAAGCAGGAAATCAGGAGACAGAAAATGGAAGCCCTACACTGGCTTGAGCGGTGGAAAAGTTGTGGACATGTTGGAGCAGATCACTGCATCATTGGGTTTTCCGAAGAATTTCCGGAATTGGCAGAATTTTCATTATCAGATCTTCAAAACGCTACGTGCAATTTTTCTGAGAGTTTCAAAGCTATGGAGGGTGGATATGGTTCTATTTATAAGGGAGAAATGTTGGGTAGAACAGTTGCTATAAGGAAGCTCCATTCACACAACATGCAAGGATCAGCAGAGTTTCATCAAGAGGTTCGAGTTCTTGGTAGTATCCAGCACCCTAATCTGGTTACTTTGCTTGGTGTATGCCCCGAAGCCTGGTCATTTGTATATGAGTACTATCCCAATGGAAGTCTTCAAGATTATCTATCCCGAAAAGGAAGTCTTTTCCCTTTGACATGGAGTATCCGAGTACGATGGATTTCTGAAATTGCTAGAGCTCTCTGTTTCCTACATTCTTCCAGACCTGAAACTATTATTCACGGTGGTCTGACTCTTGAAACTGTCCTTCTTGACACTGGACTTAGTTGCAAGATATGTGAATTTGGGTTCAGCAGGCTGGTGAAAGAGGAGTCACTTTCTCTTCCTTGTTTTCACTTAAGCACTGAGCCAAAGGGTTCTTTTTCGTATATAGATCCTGAGCTTCAGCGAACTGGAGTACTAACACCTAAGTCTGACGTATACTCTTTTGGACTCATCATTCTGCAACTCCTCACTGGTAGGACTCCAGTTGGATTAGCTGGTGAAGTACGCAGAGCAATTTCTTGTGGAAAATTGTCTTCAATTTTGGATTCTTCAGCTGGAGAATGGAATTCCACCGGTGCAACACGATTGGCTGAACTGGGATTGCAATGCTGCCAACTGAACAGTAGAGACAGACCAGAGTTAACACCCTCTCTAGTGAGGGAATTGAAGCAGTTGTATGTTTCAGAAGAGCGACCAGTGCCATCTTTTTTCTTGTGTCCAATCTTTCAGGAAATAATGCATGATCCTCAAGTTGCCGCAGATGGATTTACTTATGAAAGGAAGGCCATAAGGGAATGGCTGGAAAATGGGCACGAAACTTCTCCTATGACTAATTTAAAATTGAGTTACCTTCATCTCACTCCCAATCATGCACTTCGACTTGCTATTCAAGACTGGCTTTGCAAATCTTGA 2403 0.4191 MPSNALHFSTQPPHLTAMDEYECDEQVHVAVGKSLKKDTTLIQWCFTHFSKTHICLLHVYRPSTMIPTLLGKLPASQASPEVVSAYRIEEREDTKRLMEKYLSLCRAAKVKVTSIIGEADQVQKGIVDLVTVHNIRKLVIGAITPENCMKLKRNSSKANFAVKNVPPFCEIWFVYKGKHIWTREASETRCFVSSLAQPETTTAESLSCRSFQYGTNELFHSECLQSNSTRTTRSTVPNEIIEAEATFSSKSSSCNSHCSPQHSASRHVDTHSELEEEKIDSQLIEAKGEANAATDKALEELLKCKRLEFKAIEAISKVNFFESARAHEVKLRKEVADAVRATIQEQQMFLEEKEEISRELEMTTRSISLLGNCAHEINSKRDEATNELSLIQASSSNLQHEKQEIRRQKMEALHWLERWKSCGHVGADHCIIGFSEEFPELAEFSLSDLQNATCNFSESFKAMEGGYGSIYKGEMLGRTVAIRKLHSHNMQGSAEFHQEVRVLGSIQHPNLVTLLGVCPEAWSFVYEYYPNGSLQDYLSRKGSLFPLTWSIRVRWISEIARALCFLHSSRPETIIHGGLTLETVLLDTGLSCKICEFGFSRLVKEESLSLPCFHLSTEPKGSFSYIDPELQRTGVLTPKSDVYSFGLIILQLLTGRTPVGLAGEVRRAISCGKLSSILDSSAGEWNSTGATRLAELGLQCCQLNSRDRPELTPSLVRELKQLYVSEERPVPSFFLCPIFQEIMHDPQVAADGFTYERKAIREWLENGHETSPMTNLKLSYLHLTPNHALRLAIQDWLCKS 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00726 800 CDD RING-Ubox_WDSUB1-like 731 786 - -
Phco9g00726 800 Gene3D Phosphorylase Kinase; domain 1 433 528 - -
Phco9g00726 800 CDD STK_N 27 177 - -
Phco9g00726 800 Coils Coil 391 411 - -
Phco9g00726 800 ProSiteProfiles Protein kinase domain profile. 456 724 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00726 800 Pfam U-box domain 730 799 IPR003613 GO:0004842|GO:0016567
Phco9g00726 800 SUPERFAMILY Protein kinase-like (PK-like) 439 713 IPR011009 -
Phco9g00726 800 Gene3D Transferase(Phosphotransferase) domain 1 529 729 - -
Phco9g00726 800 PANTHER OS02G0152300 PROTEIN 27 794 - -
Phco9g00726 800 ProSiteProfiles U-box domain profile. 729 800 IPR003613 GO:0004842|GO:0016567
Phco9g00726 800 Gene3D HUPs 22 142 IPR014729 -
Phco9g00726 800 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 730 800 IPR013083 -
Phco9g00726 800 Pfam Protein tyrosine and serine/threonine kinase 464 712 IPR001245 GO:0004672|GO:0006468
Phco9g00726 800 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 48 142 - -
Phco9g00726 800 SMART Ubox_2 733 796 IPR003613 GO:0004842|GO:0016567
Phco9g00726 800 SUPERFAMILY RING/U-box 727 799 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00726 Phco-Chr9 5373222 5381774 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Phco9g00726 PK_Tyr_Ser-Thr 4.3e-33 CL0016