Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00720 ATGGCATTAGGGTGCCTTGGAGGGACGAAAGAAAATTCCAAAAATTGCCCCTGCACTGGAGCATGTCACTACCCAGTCCATAAGTACTCCCCCCTCTCTCCCGGACCAATCGCCTCTCATAACTATTTTCAACTTACAGAGTGGAAAAAAAGAAGAAGAAAAATGGCAGTGCCAAACATTTTGCTCTGCATTGCCTTCCTTATCTCCTTAACATGGATGGTTGAAGCACGAATTCCAGGGGTTTACGCTGGTGGTGCATGGGAAAGTGCTCACGCTACCTTCTACGGAGGATCCGATGCTTCCGGCACCATGGGGGGAGCGTGCGGGTATGGGAACCTGTACAGCCAAGGCTACGGTGTGAACACGGCGGCATTGAGCACAGCGCTTTTCAACAATGGCCTTAGCTGCGGCGCGTGCTTTGAGATCAAGTGCGCAAACGACAGACAGTGGTGTCACTCCGGAAGCCCTTCCATCTTCATCACCGCAACAAACTTTTGCCCTCCCAACTACGCTCTTCCAAACGACAATGGCGGCTGGTGCAACCCACCTCGTCCTCACTTCGACCTCGCCATGCCCATGTTCCTTAAAATCGCCGAATACCGCGCCGGAATTGTCCCTGTTGCCTTTCGCCGGGTGCCATGCAGAAAGCACGGAGGGATAAGGTTCACCATCAACGGATTCCGTTATTTCAACCTGGTGCTCGTTAGCAACGTGGCGGGTGCGGGGGATATCGTGCGCATCTACGTGAAGGGGTCTCGAACGGGGTGGATGCCAATGAGCCGAAACTGGGGTCAGAACTGGCAGTCAAACGCGGTTTTGGTGGGGCAGGCGCTGTCGTTTCGCGTGACGAGCAGCGACCGCCGCACCTCCACCTCGTGGAACATCGCTCCACCCCACTGGCAATTCGGTCAAACTTTCACCGGCAAAAATTTCCGAGTCTGA 942 0.5446 MALGCLGGTKENSKNCPCTGACHYPVHKYSPLSPGPIASHNYFQLTEWKKRRRKMAVPNILLCIAFLISLTWMVEARIPGVYAGGAWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDRQWCHSGSPSIFITATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKHGGIRFTINGFRYFNLVLVSNVAGAGDIVRIYVKGSRTGWMPMSRNWGQNWQSNAVLVGQALSFRVTSSDRRTSTSWNIAPPHWQFGQTFTGKNFRV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00720 313 SUPERFAMILY PHL pollen allergen 216 308 IPR036749 -
Phco9g00720 313 FunFam Expansin 219 311 - -
Phco9g00720 313 CDD DPBB_EXPA_N 87 214 - -
Phco9g00720 313 Gene3D - 219 311 IPR036749 -
Phco9g00720 313 PRINTS Expansin signature 158 168 IPR002963 GO:0009664
Phco9g00720 313 PRINTS Expansin signature 194 207 IPR002963 GO:0009664
Phco9g00720 313 PRINTS Expansin signature 230 251 IPR002963 GO:0009664
Phco9g00720 313 PRINTS Expansin signature 117 131 IPR002963 GO:0009664
Phco9g00720 313 PRINTS Expansin signature 144 155 IPR002963 GO:0009664
Phco9g00720 313 PRINTS Expansin signature 218 230 IPR002963 GO:0009664
Phco9g00720 313 PRINTS Expansin signature 177 194 IPR002963 GO:0009664
Phco9g00720 313 PRINTS Expansin signature 294 310 IPR002963 GO:0009664
Phco9g00720 313 PRINTS Expansin signature 265 286 IPR002963 GO:0009664
Phco9g00720 313 Pfam Expansin C-terminal domain 220 297 IPR007117 -
Phco9g00720 313 Pfam Lytic transglycolase 122 208 IPR009009 -
Phco9g00720 313 SUPERFAMILY Barwin-like endoglucanases 62 237 IPR036908 -
Phco9g00720 313 SMART dpbb_1 122 209 IPR007112 -
Phco9g00720 313 Gene3D - 75 215 IPR036908 -
Phco9g00720 313 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 229 308 IPR007117 -
Phco9g00720 313 PANTHER EXPANSIN-A15 71 311 IPR002963 GO:0009664
Phco9g00720 313 PRINTS Expansin/Lol pI family signature 294 308 IPR007118 GO:0005576
Phco9g00720 313 PRINTS Expansin/Lol pI family signature 86 101 IPR007118 GO:0005576
Phco9g00720 313 PRINTS Expansin/Lol pI family signature 126 144 IPR007118 GO:0005576
Phco9g00720 313 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576
Phco9g00720 313 PRINTS Expansin/Lol pI family signature 202 218 IPR007118 GO:0005576
Phco9g00720 313 PRINTS Expansin/Lol pI family signature 104 122 IPR007118 GO:0005576
Phco9g00720 313 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 105 219 IPR007112 -
Phco9g00720 313 FunFam Expansin 76 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00720 Phco-Chr9 5324172 5327508 Dispersed/Wgd