Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00704 ATGGGCGTCTCTTCTCAAGCAGTCAGCGGTCAACGGTCAACGGTCAACGGTCAACACTCCCATTTCTTCCTCTTCCTTGCCCTTTCGTTGCTTCTCCTTCTGCTTCCTTCCCTTCCCTTCCCTCAGTTCGTATTGAGAGAGGCATATACGCGCTCCTTTCATTTATATTCACGCTCTCCCCTTCAACTCTCCTCAAACACACTCTTTCTCTTTCTCTCTCTTTCCATTTCGTCAAAAAACATGAATTCGGACACGCAACACGGAACGCCGTCGTATTGGTGCTACAACTGCACCCGCTTCATTCACCTCTCATCGCAAGCCACCATCGCCTGTCCCCACTGCCAGAGTGGCTTCGTCGAAGAGATCAGAGCCGAAGCCTCGCCGCGCCACCGTCTCAGCCCTTTCCCCGACGACCAACTTTCACTCCGCCGACAAGGATTCCGCCGCCGCCGTCGCGACGCCGCCGGAAACCGCTCTCCCTTTAACCCCGTTATCGTCCTCCGGGGACCCGGCGATGACTCCGCTGCTGAACACGATGGCGCCAGCACCTTCGAGCTCTTCTACGACGACGGCGACGGTACTGGCCTCCGTCCGCTCCCGCCCACCATGTCGGAGTTCCTTCTCGGCTCAGGCTTCGACCGCCTACTTGAGCAGTTCGCGCAGATCGAGATGAACGGCTTCGGCCGCCCGGAGAACCCGCCGGCGTCCAAGGCGGCGATCGAGTCCATGCCGACGATCGAGATCGGTGAAGCGCATGTGGAGACCGACGCGCACTGCGCCGTGTGCAAGGAGGCGTTTGAGGTCCACGCGGAGGCGCGTGAGTTACCCTGCCAACATATTTACCACTCCGACTGCATCCTCCCGTGGCTCTCCATGCGGAACTCGTGCCCGGTGTGCCGCCACGAGCTTCCGTCCGATTTGGAAACTAGGGCTCCGAGTCAGATCGACGAGGAGGCAATAGGGTTAACTATCTGGAGGCTTCCGGGTGGGGGATTCGCCGTGGGTCGATTTTCTGGCGGCCGGAGAGCTGGAGAGAATAATTTCCCGGTTGTGTACACGGAGATGGATGGTGGACTGAACTCGAACGGAGCTCCGAGGAGAATTTTTCGGTCGGTGAGAAGCAGTAGGGTTAGGGAGGGTCGAGGGTTTGGTAGGGTTATTCGCAATTTGTTTTCATTCTTTGGAAGGATTGGTTCTAGAAACTCTTCTTCTAGAAACTCTTCTTCGTCTTTGTCATCTTCCGAACATGCTTCCGTGATTAGAAGCCGTAGTCAAGTGAGTTCAGTCTTCAACAGAAGCTCACGGAGACATAGCAGAACTTTTGTTTTGGATGATTAA 1338 0.5613 MGVSSQAVSGQRSTVNGQHSHFFLFLALSLLLLLLPSLPFPQFVLREAYTRSFHLYSRSPLQLSSNTLFLFLSLSISSKNMNSDTQHGTPSYWCYNCTRFIHLSSQATIACPHCQSGFVEEIRAEASPRHRLSPFPDDQLSLRRQGFRRRRRDAAGNRSPFNPVIVLRGPGDDSAAEHDGASTFELFYDDGDGTGLRPLPPTMSEFLLGSGFDRLLEQFAQIEMNGFGRPENPPASKAAIESMPTIEIGEAHVETDAHCAVCKEAFEVHAEARELPCQHIYHSDCILPWLSMRNSCPVCRHELPSDLETRAPSQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGENNFPVVYTEMDGGLNSNGAPRRIFRSVRSSRVREGRGFGRVIRNLFSFFGRIGSRNSSSRNSSSSLSSSEHASVIRSRSQVSSVFNRSSRRHSRTFVLDD 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00704 445 ProSiteProfiles Zinc finger RING-type profile. 259 300 IPR001841 -
Phco9g00704 445 Pfam zinc-ribbon 91 122 IPR039525 GO:0061630
Phco9g00704 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 306 IPR013083 -
Phco9g00704 445 CDD RING-H2_RNF126-like 259 300 - -
Phco9g00704 445 FunFam E3 ubiquitin-protein ligase RING1-like 221 306 - -
Phco9g00704 445 SUPERFAMILY RING/U-box 239 310 - -
Phco9g00704 445 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 139 304 - -
Phco9g00704 445 Pfam Protein of unknown function (DUF1117) 320 435 IPR010543 -
Phco9g00704 445 SMART ring_2 259 299 IPR001841 -
Phco9g00704 445 Pfam Ring finger domain 258 300 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00704 Phco-Chr9 5201916 5203662 Dispersed/Wgd