Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00701 ATGCTTGGGAGTAACGAGGGTTCTTTTGGAGATGAACTGGAGAAGGAGATAGGGATGTTGCTTCGTGAGCAACGCCGACAAGAGGCTGATGATCGTGAGAGAGAGCTTAATATTTTTAGGAGTGGATCAGCGCCTCCAACTGTGGAGGGTTCTTTAAGTGCTGTTGGAGGGTTGTTTGGTGGTGGTGCTGTTGCAGGTGCTGCTGCTGGTGATGTTGGTTCCTTTTCGGAGTTTCATGGGACTAAGGATGTGAATGGGATTGCTTCCGAGGAGGAGCTAAGGTCTGATCCAGCTTATCTTTCATACTATTACTCCAATGTGAATTTGAATCCTAGGCTGCCACCTCCTTTGCTGTCAAAGGAGGATTGGAGGTTTCAACAGAGACTTAAAGGTGGTGTTTCAGTTGTGGGTGGAATTGGAGATAGGAGGAAAGTGAACAGGGCTGACGATATTGGTGGTAGATCCTTCTTTTCTACTCCACCGGGTTTTAACATGAGGAAACAAGAGAGTGAAGTGGATAATGAAAAAACAAGAGGTACTGCGGAGTGGGGTGGTGATGGACTGATTGGTTTGCCCGGAATAGGGCTGAGCAAACAGAAGAGTTTTGCAGAAATTTTCCAGGATGATTTGGTACGTAATACCTCTGTCACAGGCCCTCCTTCTCGTCCAGCCAGTCGTAATGCATTTGATGACAATGATATCATTAGTCCTGCTGAAGCAGAGTTAGCTCATGTGCGCCGTGAGTCCACAACAACTGATGCACTGAGGTCAGGATCAAATGTTCAAGGATCATCTGTATCCCAAAATACTGGCTTACCAGCTTCATATTCTTATGCTGCTGCGGTTGGATCTTCCTTGCCAAGAAGCACTACTCCTGATCCACAGCTTGTTGCTAGGGCTCCCAGTCCTTGCATCACACCTATTGGTGGTGGCAGAGCTACACCTTCTGACAAGAGAATTATTGCGAGTCCAGATGGATTTAATAGTGTTTCATCTGGCATCAATGAGTCAGCAGATCTTGTGGCAGCATTGTCAGTGATGAACTTGTCTGCAGATGACATATTAGATGGTGATAACCGTTTGCCATCCCAGGTTGAATCAGATGTTGATAATCACCAGAGATATCATTTTGGTAGGCAAGATCACGGGAAGCAACATGCTTATTTAAAGAAATCTGAATCAGCTCACTTGCAAAATTCAAGTAAGAGTAGGGACGGTTCTGATCTTAGCAATTCGTCATTGGATAGGCAGGTTGAGCTACAAAAGTCTAATGTTCCTTCCAATAATTCATATTTCAAAGCATCACCTACCTCCCATTTTATTAGAGGAGGTAATTTCCCACCTCAGTACCAGCCTATAGATGGTTCAAATTCATTGTATACTAACTATGATCTGAGTGGGTACACTGGAAATCCAGCATTGGCATCCTTGATGACTAACCAACTTGGCACTGGTAATCTGCCACCCTTGTTTGAAAATGTCGCTGCAGCATCTGCAATGGCAGCCCCTGGAATGGACTCAAGAATTCTTGGAGGTGGTTTGGCGTCTCGAGCTGCTGCTCCATCTGATGTGCATAATCTTGGTAGGATGGGAAATCAAATTCCGGGCAGTGCTCTTCAGGCCCCTTTTGTTGATCCTATGTATCTTCAGTATCTGAGGACATCCGAGTATGCAGCACAACTTGGTGCTCTTAGTGACCCCTCTGTCGACAGGAACTACCTGGGCAATTCATACATGAGTTTACTTGAGCTCCAGAAAGCTTATCTTGGGTCTATCCTCTCACCTCAGAAATCTCAATACAATGTACCTCTGGGTGGTAAATCAGGCAGCTCCACTCCTCATAGTTATTATGGAAATCCTGCTTATGGTGTTGGGCTGTCTTATCCAGGAAGTCCAATGGCAAACTCTGTTGTATCCACCACCCCTGTAGGATCTGGAAGTCCTGTTAGGCACAATGAACTGAATATGCGTTTTGCTTCTGGAATGAGGAATTTAGCTGGGGTAATGGGACCTTGGCATGTAGATACTGGGAACATTGATGAAAGCTTTGCTTCTTCTCTGTTGGAGGAGTTTAAAGGCAATAAAACAAAGTGCTTTGAGCTTTCTGAAATTGCTGGTCATGTTGTTGAATTCAGTGCTGATCAATACGGGAGCCGATTTATTCAACAAAAGCTTGAAACGGCCACTACAGAAGAAAAGAACATGGTTTATCAGGAAATCATGCCACATGCCCTTGCTTTGATGACTGATGTCTTTGGTAATTATGTGGTTCAAAAGTTTTTTGAGCATGGACTTGCAGCCCAGAGAAGAGAGTTGGCCAACAAACTTCTTGGCCATGTTCTGACACTTAGCCTTCAAATGTATGGTTGCCGGGTCATCCAGAAGGCCATCGAAGTTGTTGATCTAGATCAGAAGATAGTGATGGTGCAAGAGCTTGATGGTAATGTCATGCGCTGTGTACGTGATCAAAATGGTAATCATGTCATTCAGAAGTGTATTGAATGTGTCCCTGAAGATGCAATCAATTTTATTGTCTCAACATTTTTTGATCAAGTTGTGACCCTCTCAACCCATCCATATGGTTGCCGGGTTATACAGAGAGTTCTGGAACATTGTGAAGATCTCACAACTCAGCAGAAAGTTATGGATGAAATTTTAGGAGCAGTTAGCATGTTAGCTCAGGATCAGTATGGGAACTACGTTGTTCAGCATGTTCTGGAGCATGGGAAGCCTCATGAGCGTTCTTCTATAATAAAGGAATTAGCAGGCAAGATTGTTCAAATGAGTCAACAGAAGTTTGCCTCCAATGTTGTGGAGAAATGTTTGACGTTTGGAGGTCCTCTTGAGCGCCAATTACTAGTGCATGAGATGCTTGGCTCCACAGATGAAAATGAGCCTCTTCAGGCCATGATGAAAGATCAGTTTGCAAATTACGTTGTACAAAAGGTGCTGGAAACATGTGATGATCAGCAGCGTGAACTGATTCTTTCACGAATTAAGGTTCATTTAAATGCATTGAAGAAGTACACCTATGGAAAGCACATCGTTGCACGTGTAGAAAAACTTGTTGCTGCTGGAGAAAGGAGAATTGCTGCTCAGTCTCCCCAACCTGCTTAG 3117 0.4415 MLGSNEGSFGDELEKEIGMLLREQRRQEADDRERELNIFRSGSAPPTVEGSLSAVGGLFGGGAVAGAAAGDVGSFSEFHGTKDVNGIASEEELRSDPAYLSYYYSNVNLNPRLPPPLLSKEDWRFQQRLKGGVSVVGGIGDRRKVNRADDIGGRSFFSTPPGFNMRKQESEVDNEKTRGTAEWGGDGLIGLPGIGLSKQKSFAEIFQDDLVRNTSVTGPPSRPASRNAFDDNDIISPAEAELAHVRRESTTTDALRSGSNVQGSSVSQNTGLPASYSYAAAVGSSLPRSTTPDPQLVARAPSPCITPIGGGRATPSDKRIIASPDGFNSVSSGINESADLVAALSVMNLSADDILDGDNRLPSQVESDVDNHQRYHFGRQDHGKQHAYLKKSESAHLQNSSKSRDGSDLSNSSLDRQVELQKSNVPSNNSYFKASPTSHFIRGGNFPPQYQPIDGSNSLYTNYDLSGYTGNPALASLMTNQLGTGNLPPLFENVAAASAMAAPGMDSRILGGGLASRAAAPSDVHNLGRMGNQIPGSALQAPFVDPMYLQYLRTSEYAAQLGALSDPSVDRNYLGNSYMSLLELQKAYLGSILSPQKSQYNVPLGGKSGSSTPHSYYGNPAYGVGLSYPGSPMANSVVSTTPVGSGSPVRHNELNMRFASGMRNLAGVMGPWHVDTGNIDESFASSLLEEFKGNKTKCFELSEIAGHVVEFSADQYGSRFIQQKLETATTEEKNMVYQEIMPHALALMTDVFGNYVVQKFFEHGLAAQRRELANKLLGHVLTLSLQMYGCRVIQKAIEVVDLDQKIVMVQELDGNVMRCVRDQNGNHVIQKCIECVPEDAINFIVSTFFDQVVTLSTHPYGCRVIQRVLEHCEDLTTQQKVMDEILGAVSMLAQDQYGNYVVQHVLEHGKPHERSSIIKELAGKIVQMSQQKFASNVVEKCLTFGGPLERQLLVHEMLGSTDENEPLQAMMKDQFANYVVQKVLETCDDQQRELILSRIKVHLNALKKYTYGKHIVARVEKLVAAGERRIAAQSPQPA 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00701 1038 ProSiteProfiles Pumilio RNA-binding repeat profile. 884 919 IPR001313 GO:0003723
Phco9g00701 1038 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 683 1023 IPR033133 GO:0003723
Phco9g00701 1038 SUPERFAMILY ARM repeat 686 1020 IPR016024 -
Phco9g00701 1038 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 99 1022 - -
Phco9g00701 1038 Pfam Pumilio-family RNA binding repeat 925 958 IPR001313 GO:0003723
Phco9g00701 1038 Pfam Pumilio-family RNA binding repeat 743 776 IPR001313 GO:0003723
Phco9g00701 1038 Pfam Pumilio-family RNA binding repeat 851 886 IPR001313 GO:0003723
Phco9g00701 1038 Pfam Pumilio-family RNA binding repeat 890 921 IPR001313 GO:0003723
Phco9g00701 1038 Pfam Pumilio-family RNA binding repeat 970 999 IPR001313 GO:0003723
Phco9g00701 1038 Pfam Pumilio-family RNA binding repeat 822 845 IPR001313 GO:0003723
Phco9g00701 1038 Pfam Pumilio-family RNA binding repeat 707 741 IPR001313 GO:0003723
Phco9g00701 1038 Pfam Pumilio-family RNA binding repeat 779 812 IPR001313 GO:0003723
Phco9g00701 1038 FunFam Pumilio homolog 1 isoform 2 682 1029 - -
Phco9g00701 1038 CDD Pumilio 699 1019 IPR033712 GO:0003723
Phco9g00701 1038 ProSiteProfiles Pumilio RNA-binding repeat profile. 739 774 IPR001313 GO:0003723
Phco9g00701 1038 ProSiteProfiles Pumilio RNA-binding repeat profile. 811 846 IPR001313 GO:0003723
Phco9g00701 1038 MobiDBLite consensus disorder prediction 156 184 - -
Phco9g00701 1038 MobiDBLite consensus disorder prediction 249 270 - -
Phco9g00701 1038 MobiDBLite consensus disorder prediction 252 270 - -
Phco9g00701 1038 Gene3D - 683 1029 IPR011989 -
Phco9g00701 1038 MobiDBLite consensus disorder prediction 284 317 - -
Phco9g00701 1038 ProSiteProfiles Pumilio RNA-binding repeat profile. 703 738 IPR001313 GO:0003723
Phco9g00701 1038 ProSiteProfiles Pumilio RNA-binding repeat profile. 956 997 IPR001313 GO:0003723
Phco9g00701 1038 ProSiteProfiles Pumilio RNA-binding repeat profile. 775 810 IPR001313 GO:0003723
Phco9g00701 1038 SMART pum_5 920 955 IPR001313 GO:0003723
Phco9g00701 1038 SMART pum_5 962 997 IPR001313 GO:0003723
Phco9g00701 1038 SMART pum_5 703 738 IPR001313 GO:0003723
Phco9g00701 1038 SMART pum_5 739 774 IPR001313 GO:0003723
Phco9g00701 1038 SMART pum_5 811 846 IPR001313 GO:0003723
Phco9g00701 1038 SMART pum_5 775 810 IPR001313 GO:0003723
Phco9g00701 1038 SMART pum_5 847 883 IPR001313 GO:0003723
Phco9g00701 1038 SMART pum_5 884 919 IPR001313 GO:0003723
Phco9g00701 1038 ProSiteProfiles Pumilio RNA-binding repeat profile. 847 883 IPR001313 GO:0003723
Phco9g00701 1038 Pfam Nucleic acid binding protein NABP 299 702 IPR012940 -
Phco9g00701 1038 ProSiteProfiles Pumilio RNA-binding repeat profile. 920 955 IPR001313 GO:0003723
Phco9g00701 1038 MobiDBLite consensus disorder prediction 392 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00701 Phco-Chr9 5168727 5175226 Dispersed/Wgd