Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00676 ATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACGTCAAATCAAACCTCCATGATTTGTCTGATAATGATGATGATGGGAAGAGGAATGAGAAGGATCCTAGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGCTGAGAGTTGCCACCTCAGGATTCTCACCAGACAACATTGTCTCGGAACACGGTGAGAAGGCTCCAAATGTTGTCTACAAAGGGATGCTTGAGGATGATAGGTTGGTTGCTGTGAAGCGCTTCAATAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGAGGAGGCACGTGCTGTGGGGCAGCTGAGGAATGAGAGATTGGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAGAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTCTCTAAACACCTTTTTCATTGGGAAGCCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCTTTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTATTTGATCAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACGCCTCCAGAGTACTTGAGGACAGGAAGAATCACTGCTGAAAGTGTGGTTTACAGTTTTGGCACCCTATTACTTGATCTTTTGAGCGGAAAGCATATCCCACCGAGTCATGCACTTGACCTTATCCGAGGCAAAAATTTTCTGTTGCTGATGGACTCGTGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGGTTAGCGTCGCGTTGTTTACAATATGAACCTCGTGAGAGACCAAATGTTAAGTCGCTTGTGACTGCTCTGACTCCTCTTCAGAAAGAAACTTCGGTACCGTCATATGTTTTAATGGGCATACCAGATCGAAGTCTGTCATCAAAGGAAACAGTTTCATTAACACCTTTTGGTGACGCTTGTTCCAGAAGAGATCTCACTGCAGTACATGAGATTTTGGATAAAGTGGGCTACAAGGATGATGAAGATGTTGCAAATGAGCTTTCCTTCCAAATGTGGACAAATCAAATACAAGAGACTCTAAATTCGAAGAAGCAAGGCGATTCTGCTTTCCATGCTAGAGACTTCTCTACAGCCATTGACTGCTATACACAATTCATCGATGGTGGAACCATGGTATCGCCTACCGTGTATGCCAGACGCTGCTTATGCTATCTGATGAATGACATGGCACAAGAAGCACTTGGAGATGCCATGCAAGCTCAATCAATATCTTCAACCTGGCCCACTGCATACTATCTTCAAGCAGCTGCTCTCTTCAGCCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGATGGAACAACACTGGAAACCAGGAAGCATAGAAACTGA 1479 0.4469 MGARCSKFSLCWWPSHVKSNLHDLSDNDDDGKRNEKDPRGGFSEYSLDQLRVATSGFSPDNIVSEHGEKAPNVVYKGMLEDDRLVAVKRFNKSAWPDSRQFLEEARAVGQLRNERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALTPLQKETSVPSYVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAVHEILDKVGYKDDEDVANELSFQMWTNQIQETLNSKKQGDSAFHARDFSTAIDCYTQFIDGGTMVSPTVYARRCLCYLMNDMAQEALGDAMQAQSISSTWPTAYYLQAAALFSLGMDNDAQESLKDGTTLETRKHRN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00676 492 FunFam probable serine/threonine-protein kinase At5g41260 137 328 - -
Phco9g00676 492 SUPERFAMILY TPR-like 389 488 IPR011990 GO:0005515
Phco9g00676 492 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 11 491 IPR045845 GO:0004672|GO:0009742
Phco9g00676 492 Pfam Protein tyrosine and serine/threonine kinase 74 311 IPR001245 GO:0004672|GO:0006468
Phco9g00676 492 Gene3D Transferase(Phosphotransferase) domain 1 137 328 - -
Phco9g00676 492 FunFam probable serine/threonine-protein kinase At4g35230 32 135 - -
Phco9g00676 492 FunFam probable serine/threonine-protein kinase At4g35230 385 492 - -
Phco9g00676 492 MobiDBLite consensus disorder prediction 23 43 - -
Phco9g00676 492 Gene3D Tetratricopeptide repeat domain 385 491 IPR011990 GO:0005515
Phco9g00676 492 ProSiteProfiles Protein kinase domain profile. 60 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco9g00676 492 SUPERFAMILY Protein kinase-like (PK-like) 41 318 IPR011009 -
Phco9g00676 492 MobiDBLite consensus disorder prediction 23 42 - -
Phco9g00676 492 Gene3D Phosphorylase Kinase; domain 1 31 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00676 Phco-Chr9 5030061 5033587 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Phco9g00676 PK_Tyr_Ser-Thr 4.5e-28 CL0016