Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00668 ATGGCGTCGACGGCGATCGAGGAAGTCCGAACTCTGTGGATTGGCGATTTGCAGTACTGGGTGGACGAGTCCTACCTCTCACAGTGCTTCGCCCACAGCGGCGAAGTGGTTTCCATCAAAATCATTCGCAACAAGATGACGGGCCAGCCTGAGGGCTACGGCTTCGTGGAGTTCGTTTCTCACGCGGCGGCGGAGGCCTTTCTCCGCACCTACAACGGCACTCAAATGCCCGGTACGGAACAGACCTTCCGGCTTAATTGGGCCTCCTTCGGAGACTCTGGGCCCGACCATTCCATATTCGTAGGCGATCTCGCCCCCGACGTCACCGATTTCCTGCTCCAGGAGACTTTCCGGGCTCATTATCCTTCCGTCAAAGGGGCCAAAGTCGTCACGGACCCCGCCACCGGCCGCTCCAAGGGCTATGGCTTCGTTAAGTTCACCGACGAGACTCAGAGGAACCGTGCCATGACTGAAATGAACGGTGTTTATTGCTCCACGCGCCCTATGCGTATCAGCGCCGCTACTCCTAAAAAGAACGCTTCTTTTCAAAACCAATATGCTCCACCTAAAGCAATGTATCAATTTCCTGCATACACTGCTCCTGTGAATACCGTTGCGCCAGAAAATGATGTGAATAATACCACTGTTTGTATTGGTAATTTGGATCTTAATGTGACAGAGGATGAGCTTAAGCAAACCTTTATGCAATTTGGAGATATTGTGTCGGTCAAAATTTATGCGGGCAAAGGATATGGTTATGTTCAATTTGGAACTAGAGCGTCCGCCGAAGATGCGATTCAGAGGATGCAGGGAAAGATAATAGGTCAACAAGTGATCCAAATTTCTTGGGCTAGTACCTTAACAGCTAGACAGGATGTACCTAGTGGCTGGGGAGCTCAGATAGATCCAAATCAATGGAGTGCCTATTATGGATATGGACAGGGTTACGAGGCATATGCTTATGGTGCTGCTCATGATCCCTCCTTGTATGCTTATGGTGCATACGCTGGTTACGCCGCACAATACCCTCAACAGGTTGAAGGTGGTCAAGACATGGCAGTATGTATGCCTGTGGAGGAGTCTTATGATCCCCTGTCATTGCCTGATGTCGACAAATTAAATGCTGCATATCTTTCTACGCATGGAAGTTCCATTTTAGGACGGTCCCTTTGGCAGAGAACTTCGCAATCTTTACAGCAAGCATAG 1206 0.4983 MASTAIEEVRTLWIGDLQYWVDESYLSQCFAHSGEVVSIKIIRNKMTGQPEGYGFVEFVSHAAAEAFLRTYNGTQMPGTEQTFRLNWASFGDSGPDHSIFVGDLAPDVTDFLLQETFRAHYPSVKGAKVVTDPATGRSKGYGFVKFTDETQRNRAMTEMNGVYCSTRPMRISAATPKKNASFQNQYAPPKAMYQFPAYTAPVNTVAPENDVNNTTVCIGNLDLNVTEDELKQTFMQFGDIVSVKIYAGKGYGYVQFGTRASAEDAIQRMQGKIIGQQVIQISWASTLTARQDVPSGWGAQIDPNQWSAYYGYGQGYEAYAYGAAHDPSLYAYGAYAGYAAQYPQQVEGGQDMAVCMPVEESYDPLSLPDVDKLNAAYLSTHGSSILGRSLWQRTSQSLQQA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00668 401 SUPERFAMILY RNA-binding domain, RBD 195 314 IPR035979 GO:0003676
Phco9g00668 401 CDD RRM1_SECp43_like 11 91 - -
Phco9g00668 401 SMART rrm1_1 215 282 IPR000504 GO:0003723
Phco9g00668 401 SMART rrm1_1 11 86 IPR000504 GO:0003723
Phco9g00668 401 SMART rrm1_1 98 172 IPR000504 GO:0003723
Phco9g00668 401 FunFam Polyadenylate-binding protein RBP47B 9 88 - -
Phco9g00668 401 FunFam polyadenylate-binding protein RBP45 197 293 - -
Phco9g00668 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 176 IPR000504 GO:0003723
Phco9g00668 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 288 - -
Phco9g00668 401 CDD RRM2_SECp43_like 96 175 - -
Phco9g00668 401 SUPERFAMILY RNA-binding domain, RBD 95 185 IPR035979 GO:0003676
Phco9g00668 401 FunFam Polyadenylate-binding protein RBP47B 89 187 - -
Phco9g00668 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 286 IPR000504 GO:0003723
Phco9g00668 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 80 IPR000504 GO:0003723
Phco9g00668 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 164 IPR000504 GO:0003723
Phco9g00668 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 279 IPR000504 GO:0003723
Phco9g00668 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 90 IPR000504 GO:0003723
Phco9g00668 401 SUPERFAMILY RNA-binding domain, RBD 5 78 IPR035979 GO:0003676
Phco9g00668 401 Gene3D - 96 173 IPR012677 -
Phco9g00668 401 Gene3D - 9 89 IPR012677 -
Phco9g00668 401 Gene3D - 199 292 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00668 Phco-Chr9 4962606 4965845 Dispersed/Transposed