Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco9g00645 ATGGAGTCAGATCTTCAGCAGCACCCTCCCGTGTTTTTGGATCACCACCAGCAGCAGACGAATTCAGGGTTGACACGGTATCGATCGGCTCCGAGTTCGTATTTTTCTAGCATCATCGACCGTGAGTTCTACGAGCACGTTTTCAATCGACCCTCTAGCCCGGAAACAGAACGAATTTTGACACGCTTTGTGAATAGTCTTGGTGGGGGCGATGCTGATGCTGCTGCTGCTGATGCAGAGGAGGCACTTCCTACTCAAAATCCCTCGACCGTTGTTGCTGTTAAAGAAGAGGTCAATCAACAACCTAAGGATATGCCTTTACCACCCATCAATAATGAGCCCCTTGTTCTCCAACAACAACAGCAGCATCAACAGCAAAGTAATATTAATAATTATGGCTCTTCTGCTCCTCAGAATTTTTATCAGAACACTGGACGACCACCTTTGCCAAACCAGATAGAGACTGGTCGTAGAAGTGCTTCAAATCTTATCAGGCATGGTAGCTCACCTGCTGGATTGTTTTCAAAGATTAACATTGAAAGTGGTTATGCTGCTGTAAGGGGCATGGGGACTATGGGAGCTGTTAATAACAGTACTGAGGAAGCAAACTTTTCTCCCATAACAAGGATGAAGAATGCACCAAACTACTCTTCGGGACTAATGTCATCTATGGCTGAAATTGGAAACAAAAGCAGTACACAGAATAATGCAGAAAATGAAGGGTTTGCTGAAAATCAGGGCAATGAATTTATCCCTGGTTTCCCCGTTGGTTCATGGGACGATTCTGCAATAATGTCTGACAATATGACAGGTCTGAAGAGATACAGAGAAGAAGATGTAAAACCATTTTCTGGTTTAAACGTATCCGAAAGTCAGAATGAAGCAGGAGGCCAACCTTCTACTGCTTTGGCTCATCAATTGAGTTTGCCAAATACGTCTGCAGAAATGGCAGCCATTGAGAAGTTTCTGCACCTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGAGGTTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTGCAAGATCTCGTCCCCAACATGGATAAGCAAACAAACACAGCAGACATGTTGGACTTGGCTATTGAGTACATTAAAGACCTTCAAAAGCAAGTTGAGACTCTTTCAGATAATCGCGATAAGTGTACGTGTTCACACAAGGAGCAGCAGCAGCAATAA 1242 0.4404 MESDLQQHPPVFLDHHQQQTNSGLTRYRSAPSSYFSSIIDREFYEHVFNRPSSPETERILTRFVNSLGGGDADAAAADAEEALPTQNPSTVVAVKEEVNQQPKDMPLPPINNEPLVLQQQQQHQQQSNINNYGSSAPQNFYQNTGRPPLPNQIETGRRSASNLIRHGSSPAGLFSKINIESGYAAVRGMGTMGAVNNSTEEANFSPITRMKNAPNYSSGLMSSMAEIGNKSSTQNNAENEGFAENQGNEFIPGFPVGSWDDSAIMSDNMTGLKRYREEDVKPFSGLNVSESQNEAGGQPSTALAHQLSLPNTSAEMAAIEKFLHLSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAIEYIKDLQKQVETLSDNRDKCTCSHKEQQQQ 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco9g00645 413 SMART finulus 345 395 IPR011598 GO:0046983
Phco9g00645 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 389 IPR011598 GO:0046983
Phco9g00645 413 Gene3D - 340 412 IPR036638 GO:0046983
Phco9g00645 413 MobiDBLite consensus disorder prediction 1 27 - -
Phco9g00645 413 Coils Coil 379 406 - -
Phco9g00645 413 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 409 - -
Phco9g00645 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 402 IPR036638 GO:0046983
Phco9g00645 413 FunFam Transcription factor bHLH130 family 340 409 - -
Phco9g00645 413 MobiDBLite consensus disorder prediction 12 27 - -
Phco9g00645 413 Pfam Helix-loop-helix DNA-binding domain 344 390 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco9g00645 Phco-Chr9 4734589 4737366 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco9g00645 HLH 5.6e-10 No_clan